UFO08905.5prime Sequence
1098 bp (1003 high quality bases) assembled on 2011-08-10
> UFO08905.5prime
CAGTCGACATGGATATATCCACCGATATCTGGGGTCAGCTGGCCGTGGAG
GCATCGCAGGTCTACCTCTCCGACGGCACAGTTCGCAGTCCCTTCGCCGA
TACGACCATTGAGAAGCTGCCGGACAAGGTGCTGCTGCACATCTTCTCGT
ATCTGTCGCACCGCGAGATCTGCCGCCTGGCCAGGATTTGCCGACGATGG
CGGCAGATTGCATACGACACGCGGCTGTGGAAGAACGTGAGCCTGCGACC
GGAGGTCTCCGGACTGCACGTGGGCTCGCTGGAGATGCTGCTGCAGCTGA
TCTCGGTGAGATTCGGACCGACTCTGCGCTACATCGAGCTGCCCATCGAG
CTGATCACGCACACGGTGCTCCACGAACTGTCCGCCAAGTGCCCCAATTT
GACCCACATGCTGCTGGACTTCTCCACAGCCATGCAGCTGCACGACTTCA
GCGAGATGCAGGCCTTTCCCACCAAGCTGCGCTACATGTGCGTCTGCCTC
TCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAAATCTACAACTTCAT
CAACGGCCTGGAGGTGCTGCATCTAATTGGCACGTACGAGAAGTGCGAGG
AGGAGGAGGAGGAGATCTACGAGGTGATCAACGTGCACAAGCTCAAGTCG
GCCACGCCCAATTTGCGTGTGATCAACCTGTACGGCATCAACTTCATCGA
TGACTCGCACATCGACGCCTTCAGCTCGAACTGCATCCAGCTGGAGTGCC
TGGCCGTCAACTTCTGCAACAAAGTGACCGGCTCCACCCTGAAGACCCTG
ATCCAGCGTTCCAAGCGCCTCACCTGCCTGCTCATGAACGGCACCAGCCT
GAAGTCGGAGTTCGTCATGCAGCCGAGTGGACAGTGCGCCCTGCAGAGCT
GGACATCACGGCCACGATCTTTCGACGAATGCCTCGTGACATGCTGAGCA
GATCCCAGGCTCAAGTTCCTTCTCAGCCGGCAGATCATGCTTCACGACAG
CGTTCTCAAGCAGTGTATGGAATCGGCACACAAGTCGCTCATTCCCTGAC
TGAATCTCGACACATTCTCGATGAGCTGCTAAGTTTATCCCGCCAGGT
UFO08905.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2010-RA | 1910 | CG2010-RA | 137..1193 | 8..1048 | 4795 | 98 | Plus |
| CG2010-RC | 2132 | CG2010-RC | 455..1415 | 104..1048 | 4315 | 97.8 | Plus |
| CG2010-RB | 2255 | CG2010-RB | 578..1538 | 104..1048 | 4315 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29497385..29497995 | 428..1026 | 2360 | 96.6 | Plus |
| 3R | 32079331 | 3R | 29496999..29497324 | 104..429 | 1630 | 100 | Plus |
| 3R | 32079331 | 3R | 29496677..29496773 | 8..104 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:54:29 has no hits.
UFO08905.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:26 Download gff for
UFO08905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RA | 128..1188 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:23 Download gff for
UFO08905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RA | 133..1193 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:05 Download gff for
UFO08905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RA | 133..1193 | 1..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:05 Download gff for
UFO08905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29496673..29496773 | 1..104 | 97 | -> | Plus |
| 3R | 29497000..29497324 | 105..429 | 100 | -> | Plus |
| 3R | 29497387..29497995 | 430..1026 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:23 Download gff for
UFO08905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25322395..25322495 | 1..104 | 97 | -> | Plus |
| arm_3R | 25322722..25323046 | 105..429 | 100 | -> | Plus |
| arm_3R | 25323109..25323717 | 430..1026 | 97 | == | Plus |
