UFO08906.5prime Sequence
1105 bp (1015 high quality bases) assembled on 2011-08-10
> UFO08906.5prime
CAGTCGACATGAAGGGCCAGCAGGAGGAGCAGCTGGTGCCGCCGCCGGCC
TACAAGCCCACAGTTGTCGCCAAGGACACGACAAAGGACTCCCACGCGAA
GGAGAAGCCCCTCGGCGAGGGTCGACTGGCTGTGCTGCGACAGGAACTGA
TGGTCTTCCTGGGCAACAGCGGCGTTCTCGGCTCCGGAATGGTGGTCAGC
ATGCCGGCAGTTACTCTCAATCAGCTGCACGACGAAACACAGCCATTTTG
GCTCAACAAGGACGAGTCGAGTTGGTTTGCCTCCATCCAGAACATGGCGT
GTCCTTTGGGTGGACTTCTGGTCAGCTACTTCCTGGACAGGATTGGCCGC
AAACACACCATCCTGCTGACCAATTTGATAGGACTGATTGGCTGGATCCT
GCTGGTAACCAGTTTCATGCACTCCGATCGCGACATGATCTACTATCAAA
TGCTGTTGGGTCGTTGTTTTGGCGGTATCATGATCGGCATGTTCGTATCG
CCAGTGGGTGTCTACTCCGCCGAGATTAGTTTACCCAAGATACGCGGTCG
CCTGATCCTGGGCACCTCGCTGGGCTTGGCCAGCGGCATTCTGTTGATGT
ACTGCCTCGGCTACTTCATTCGTCACAACATCCAGCTGATCTTCGGCATC
AGTTGCTGCTACCAACTGGCGGCCACACTGCTCGTCTTTCCCATGCCGGA
ATCGCCCAGCTGGCTGCTCACCCGAGGAAAGGAGGAGCGGGCCAGGAAAT
CCCTCAGATACTTCCGCGGACTGCCGAAAAAAGAGGTGGACTACGTACCG
GAATTCGAGGCGGAACTGGCGCACATGAAGGAGTTGGCAGATGCGAGCAA
CACCACCGCCGCCGGCGAATCCCTCAGCCAGATGATCCATCGTCCGGAGG
TCTACAAGCCCGTCCTGATGATGACCACGTTCTTTGATTCCACAGCGTGC
GGTGTGTGGTGATCATTGTCTATGCCGTCCAATGCCAACAGCGGGAGTTA
CATCGATCCCGTGCTGTTGCGTATGCTCGGCGTGCCAGGATAATCACTAC
GCTATTCATGAACGGCATCTTGAAAATGGGGCCCAGCGGTCTGGATCTCT
CCGCC
UFO08906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4607-RB | 2080 | CG4607-RB | 18..1121 | 9..1095 | 5025 | 97.9 | Plus |
| CG4607-RA | 2603 | CG4607-RA | 541..1644 | 9..1095 | 5025 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7070429..7070933 | 279..783 | 2525 | 100 | Plus |
| X | 23542271 | X | 7069953..7070223 | 9..279 | 1355 | 100 | Plus |
| X | 23542271 | X | 7071400..7071702 | 782..1071 | 885 | 93.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:54:33 has no hits.
UFO08906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:26 Download gff for
UFO08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4607-RB | 10..1107 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:25 Download gff for
UFO08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4607-RA | 533..1630 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:07 Download gff for
UFO08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4607-RA | 533..1630 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:07 Download gff for
UFO08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7069945..7070223 | 1..279 | 98 | -> | Plus |
| X | 7070430..7070933 | 280..783 | 100 | -> | Plus |
| X | 7071402..7071716 | 784..1083 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:25 Download gff for
UFO08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6963978..6964256 | 1..279 | 98 | -> | Plus |
| arm_X | 6964463..6964966 | 280..783 | 100 | -> | Plus |
| arm_X | 6965435..6965749 | 784..1083 | 93 | | Plus |
