UFO08907.5prime Sequence
1170 bp (1024 high quality bases) assembled on 2011-08-10
> UFO08907.5prime
CAGTCGACATGGACAACATAGAGCGACTGTACAAATGCTACGAGATTCTG
TCCGAGGCGGGCGATAAAATATCCGAACATGTGGATGAATATAAAGAGAT
ACTCAAGGCCGTGAAGGGCACGTCGAAGGAGAAGCGCCTGGCATCGCAGT
TCATTGGTAACTTCTTCAAACACTTTCCGGATTTGGCCGACACAGCCATA
GACGCGCAGTTTGATTTGTGCGAGGATGACGACACACAGATCCGCCGCCA
GGCCATCAAAGATCTGCCGAAACTGTGCCAGGGAAACGCAGATGCTACCA
TCCGAGTGGGTGATACTCTGGCCCAGCTGTTAATCCTGGACGATCCCACA
GAACTCCAGCAGGTCAACAACTCACTGCTGGCCATCATAAAATTGGACAC
CAAGAGCTCCATCGCCGGATTGTTTCAGCAAATCTCCACTGGGGATGAAA
CGACAAGGGAGCGCTGCCTCAAGTTCATTGCCACCAAGCTGCTGACCATG
GGTCCCACAGTTATTACCAAGGAAATCGAGGACTATATCGTGGAGGAGAT
CAAAAAGGCTTTGCAGGATGTCACTGCCGATGAGTTTCATCTGTGCATGA
CAATTCTGGGAGCCACCAAACTGGGAAGCACCATCACGGGACACGCCGAG
CTCGTCAAGCTGGCCACGGAGCAGGCGGAGCTAAATAACACAGACGCGGA
CATCATAGCCGTCGACGACGAGGTGGTGGAGCGATTCATTCAGTGCGCCT
CTGCTGCGGCTCCTTACTTTTCGAAAACCATCAAATCCACGGCCTTCGTG
GCTCACGTTTGCGATAAACTGTTGCCCATCAAGACCTGTAACATGATCGC
CACTGCAGTTTCGCAAGATCAAATCCAACTTAGATTACTAAAGGTATTCG
CCGAGATGATAACCAACACAGACAAGCTGGACAATGCCAGCGAACGGATT
AATGCAGTCTACAATGTATTGCTGGAATAAATGCCTTTGCCAAAGCTGAA
TGACGAGGATCTGGGAGATTACACCCGCCCCTCGTTCAGTTTTCGCACGC
CGAGGTGCTTACTTGTACGCATTGCCACACCTCTTGGAAAAATCACACCA
AATAGGTTAACGTTCCGTCTCTGCAAGAATGCGAGAACTAAGACTTCGGC
TGAATGCAATTCTGCCAGGG
UFO08907.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aac11-RA | 2458 | CG6582-RA | 172..1275 | 9..1119 | 5200 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17476693..17477228 | 773..238 | 2680 | 100 | Minus |
| 2L | 23513712 | 2L | 17476416..17476618 | 975..773 | 1000 | 99.5 | Minus |
| 2L | 23513712 | 2L | 17477399..17477560 | 239..78 | 810 | 100 | Minus |
| 2L | 23513712 | 2L | 17477649..17477717 | 77..9 | 345 | 100 | Minus |
| 2L | 23513712 | 2L | 17476265..17476362 | 1075..974 | 220 | 90.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:54:38 has no hits.
UFO08907.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:27 Download gff for
UFO08907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aac11-RA | 165..1268 | 2..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:27 Download gff for
UFO08907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aac11-RA | 167..1270 | 2..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:09 Download gff for
UFO08907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aac11-RA | 167..1270 | 2..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:09 Download gff for
UFO08907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17476417..17476617 | 774..974 | 99 | <- | Minus |
| 2L | 17476693..17477226 | 240..773 | 100 | <- | Minus |
| 2L | 17477399..17477560 | 78..239 | 100 | <- | Minus |
| 2L | 17477649..17477722 | 2..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:27 Download gff for
UFO08907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17476417..17476617 | 774..974 | 99 | <- | Minus |
| arm_2L | 17476693..17477226 | 240..773 | 100 | <- | Minus |
| arm_2L | 17477399..17477560 | 78..239 | 100 | <- | Minus |
| arm_2L | 17477649..17477722 | 2..77 | 94 | | Minus |
