UFO08909.5prime Sequence
1138 bp (1041 high quality bases) assembled on 2011-08-10
> UFO08909.5prime
CAGTCGACATGGCCTTCAATAAGCTGAGCATCGAAAACCTGGACTTGGCG
GGCAAGCGGGTGTTGATGCGCGTCGACTTCAATGTGCCCATCAAGGAGGG
CAAGATCACCAGCAACCAGAGAATTGTCGCTGCCTTGGATAGTATCAAGT
TGGCCCTTTCCAAGAAAGCCAAGTCGGTGGTGCTGATGTCCCACTTGGGT
CGTCCCGATGGCAACAAGAACATCAAGTACACCCTGGCACCCGTGGCCGC
TGAGCTGAAGACCCTGCTTGGCCAGGATGTGATCTTCCTAAGTGACTGCG
TCGGCAGCGAAGTGGAGGCCGCTTGCAAGGATCCCGCACCGGGATCCGTC
ATTCTGCTGGAGAACGTCCGCTTCTACGTGGAGGAGGAGGGCAAGGGCTT
GGATGCCAGCGGCGGCAAGGTCAAGGCCGATCCTGCCAAGGTCAAGGAGT
TCCGTGCCAGCCTGGCCAAGCTGGGCGATGTCTATGTCAACGACGCCTTC
GGCACTGCCCATCGCGCCCACAGTTCCATGATGGGCGATGGCTTCGAGCA
GCGCGCAGCTGGTCTGTTGCTGAACAAGGAGCTGAAGTACTTCTCGCAGG
CCCTGGACAAGCCACCAAATCCCTTCCTGGCAATTCTCGGTGGCGCCAAG
GTGGCCGACAAGATCCAGCTGATTGAGAACCTTCTGGACAAGGTCAACGA
GATGATCATCGGTGGCGGCATGGCCTTCACCTTCCTGAAGGTCCTCAACA
ACATGAAGATCGGCGGTTCCCTGTTCGACGAGGAGGGCTCCAAGATCGTC
GAGAAACTGGTGGAGAAGGCCAAGAAGAATAACGTGCAGTTGCATCTGCC
AGTGGACTTTGTCTGCGGCGACAAGTTCGCCGAGAACGCTGCCGTCAGCG
AGGCCACCGTGAGGCCGGAATTCCCGATGGACACATGGGTCTGGATGTGG
GTCCCAGACCCGTGAGCTCTTCGCGGCACCCATCGCACGCGCAAGCTCAT
CGTGTGGAACGGACCCCCGGTGTCTTTGGAGTTCCCCAACTTCGCCACGC
ACCAAGTCCATCATGGGAACGGCGTGGTGGCCGCCAACAAGAACGTAACC
GTTCTCACTCATCGGCGCGCGAACCCTGCTCTGCTGCC
UFO08909.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgk-RE | 1893 | CG3127-RE | 514..1624 | 9..1117 | 5260 | 98.7 | Plus |
| Pgk-RD | 1865 | CG3127-RD | 486..1596 | 9..1117 | 5260 | 98.7 | Plus |
| Pgk-RC | 1867 | CG3127-RC | 488..1598 | 9..1117 | 5260 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2747311..2748256 | 1012..70 | 4580 | 99.7 | Minus |
| 2L | 23513712 | 2L | 2743926..2744300 | 791..417 | 480 | 75.2 | Minus |
| 2L | 23513712 | 2L | 2748320..2748381 | 70..9 | 310 | 100 | Minus |
| 2L | 23513712 | 2L | 2747163..2747250 | 1102..1014 | 215 | 90.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:54:47 has no hits.
UFO08909.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:28 Download gff for
UFO08909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgk-RA | 142..1252 | 9..1117 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:32 Download gff for
UFO08909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgk-RC | 488..1598 | 9..1117 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:14 Download gff for
UFO08909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgk-RC | 488..1598 | 9..1117 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:14 Download gff for
UFO08909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2747311..2748255 | 71..1012 | 99 | <- | Minus |
| 2L | 2748320..2748381 | 9..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:32 Download gff for
UFO08909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2747311..2748255 | 71..1012 | 99 | <- | Minus |
| arm_2L | 2748320..2748381 | 9..70 | 100 | | Minus |
