UFO08912.5prime Sequence
1121 bp (1006 high quality bases) assembled on 2011-08-10
> UFO08912.5prime
CAGTCGACATGGAGTTTCTAATGAAAACGTCGCGTTTGATCGTCACATCG
AAGACGTTCGCAAGACGTGTGGCCGTTCCGATTCCCAGAATGGGTTCATT
TAACTCGGCCCCAAAGATCAACAATGTGGACTCCCAGGACGATGGCCTGG
TACTGCCCTCCGGTCTAAGCACCCCGGCTCTTCTCCAGCATGTCCAGCAA
CTGCGTGGCGGTGGCATCGAGCAGCCATCGCTGCTCACCCGCGGCTTCCT
AAAACCGCTGCTGGCGGACGAGGATGTAGCCGACGGACTGCGATGCCTCA
AGCTGAATTCCGTGTCGAGGGTTTGCAGTGCGCCAGTCGAGGGTGATGAC
ATTCGATTGCTGCAGTGGAACATCCTATCACAAACTCTCGGGCAGCACAA
CGATGGATTTGTGCGCTGTCCCGAGGAGGCTCTCACCTGGGAGCACCGCA
AGTACCTGATTGTCCAGGAGATTCTGCAGAACCAGCCCGATGTGATTTGT
CTGCAAGAGGTAGACCACTTCAAGTTTCTGCAGACCGTGTTGGGTAGCCA
GAACTACGCAGGCATCTTCTTCCCGAAACCGGATTCCCCGTGCCTGTACA
TCGAGCAGAACAATGGACCCGATGGCTGTGCCATCTTCTACAAGAGGGAC
AAACTGCAGCTGCAGGGATACGATACGAGGATCCTGGAAGTGTGGCGGGT
GCAGAGCAACCAGGTGGCCATCGCGGCCCGGCTGCGTATGCGATCCAGTG
GTCGGGAATTCTGTGTGGCCACCACCCACTTAAAGGCCCGCCATGGCGCC
CTTTTGGCGAAATTACGGAACGAACAGGGACGTGATCTCATTAGTTTGTG
AAGCAGTTTGCCGGAGATACGCCGCTGCTGCTCTGCGGCGATTTCAATGC
CGAACCGGTGGAGCCAATCTATGCCACGATCTTGGGATGTGATCTCCTCC
CGCTTGGGCAGCGCCTATGCCGACGTGAGCTAGACGCGAGGAAAATACCT
ACATCCCCACGCGGATGTCGGGTGAGTTCCGTCCGCGGAAATCGATGAAA
TCGCGAGCCACCCTTACACCACCTGCAAATCCGGAAGAGGCGCGAGGAAA
GTTCATCATCGACTACGTCAT
UFO08912.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cu-RE | 1865 | CG31299-RE | 348..1454 | 9..1119 | 5020 | 97.6 | Plus |
| cu-RC | 1710 | CG31299-RC | 269..1299 | 85..1119 | 4640 | 97.4 | Plus |
| cu-RD | 2192 | CG31299-RD | 753..1781 | 87..1119 | 4630 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11207549..11208020 | 507..978 | 2220 | 98.9 | Plus |
| 3R | 32079331 | 3R | 11206902..11207138 | 85..321 | 1170 | 99.6 | Plus |
| 3R | 32079331 | 3R | 11207360..11207482 | 385..507 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 11204752..11204831 | 9..88 | 400 | 100 | Plus |
| 3R | 32079331 | 3R | 11207192..11207255 | 321..384 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:54:15 has no hits.
UFO08912.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:24 Download gff for
UFO08912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cu-RE | 332..1448 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:18 Download gff for
UFO08912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cu-RE | 339..1455 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:58 Download gff for
UFO08912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cu-RE | 339..1455 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:58 Download gff for
UFO08912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11207193..11207255 | 322..384 | 100 | -> | Plus |
| 3R | 11207360..11207481 | 385..506 | 100 | -> | Plus |
| 3R | 11204743..11204831 | 1..88 | 95 | -> | Plus |
| 3R | 11206906..11207138 | 89..321 | 99 | -> | Plus |
| 3R | 11207549..11208158 | 507..1121 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:18 Download gff for
UFO08912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7030465..7030553 | 1..88 | 95 | -> | Plus |
| arm_3R | 7032628..7032860 | 89..321 | 99 | -> | Plus |
| arm_3R | 7032915..7032977 | 322..384 | 100 | -> | Plus |
| arm_3R | 7033082..7033203 | 385..506 | 100 | -> | Plus |
| arm_3R | 7033271..7033880 | 507..1121 | 95 | | Plus |
