UFO08915.5prime Sequence
1104 bp (1011 high quality bases) assembled on 2011-08-10
> UFO08915.5prime
CAGTCGACATGTTTGTGCTCATAGCTGTGCTGTTTGTTAACGCTTGCCTA
GCGGGCACCATTCCGGCTACGCCGGAGAACATAACCGTTACGTTCCTCAC
GCCCACGGCGGTCCGGGTGTCGTGGCAGACGCAAATCGATCTGAAGGCAC
ATCCCATCGAGAAGTACATCGTGACGTACAAGCCAACGGACGACAGTTAC
AGGGTTGTACAGGACGTCGCCGGCAGCAGCGAGGCCATTGTCCTGGATCG
CCTGCTGCCCAGCACACAGTACTCCCTCGTTGTGACGGCCATCTGGCAGG
GCAAGAAGTACCGCAGCCGCGGCCAGATCAAGTTCAAAACGCTGGATCTG
CCCAAGAACACCTCGCAGCAGGATTTTCCGCCGGGCATCTACGGCAATAG
CAGCAACGGTGCTCGCAATGTCACCAATAATGCCAGCATCTTTGGCGACG
ACGTGACCTCCACGGCCACCAACACCCTGACACATGGCACAACCAGGGAA
TTGCCCACGATCCGCGGCGTGGAGATCGGCATCGTCCTAATCGTACTGAT
GGTCTGGGCCGGAGCAATCGCCCTGTTCTTCAACCGGTGGGGCAAGATCC
GGATGCTGTTGCCCTATCAGCCGGACTACAAGCACGAGCAGCTGAAGGTG
CCAGGTACGGGCGTGTGCAGCGCCAGCGGATGCAATGGACAGCACTCGCA
CCAGCACATCCACATGCTGGCCGAGGAGCACTCCACCTCCATTTCGGAAC
GCTGCACCCGCAGCCGCATCAACTCGGCCATATTCGTGTCATCGGAGGGC
CGAGGTTTTGACTCCATAGAGTTCCTGCGGCGCCACGGATCCCAGAGTGT
GCTCTGCAGGAAAGCCAAGAGTGCCGAGAACATAACGGATAATGGAAAGA
AGAAGAGCCTACGGCCGTGCGCACAGACGATGAATCCTGCAGCAGCAGCA
CTCTCGCAGACAGCACGACATCGAGCTGAAGGAGTGCGGCGGGCGCTGGA
AGGAAAGCTACTCCGGCTGCGTCATCCACGATGGGCAGCAGTCCCCCCCC
AGGCCGTGACTAGTCTGCTAGCGCGATTCGCACGGATAACCCGTCAAAAT
GATT
UFO08915.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33143-RC | 4786 | CG33143-RC | 1703..2789 | 8..1091 | 5010 | 98 | Plus |
| CG33143-RF | 5551 | CG33143-RF | 1703..2397 | 8..708 | 3390 | 99 | Plus |
| CG33143-RE | 4828 | CG33143-RE | 1703..2393 | 8..704 | 3385 | 99.1 | Plus |
| CG33143-RF | 5551 | CG33143-RF | 3165..3554 | 705..1091 | 1525 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22628362..22628557 | 509..704 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 22631628..22631823 | 702..897 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 22628012..22628176 | 345..509 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 22627798..22627948 | 195..345 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 22622158..22622300 | 54..196 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 22631894..22632087 | 901..1091 | 360 | 89.4 | Plus |
| 2R | 25286936 | 2R | 22621113..22621160 | 8..55 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:55:11 has no hits.
UFO08915.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:31 Download gff for
UFO08915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33143-RC | 1691..2787 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:44 Download gff for
UFO08915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33143-RC | 1693..2789 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:24 Download gff for
UFO08915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33143-RC | 1693..2789 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:24 Download gff for
UFO08915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22628013..22628176 | 346..509 | 100 | -> | Plus |
| 2R | 22628363..22628557 | 510..704 | 100 | -> | Plus |
| 2R | 22631631..22631828 | 705..902 | 98 | -> | Plus |
| 2R | 22621103..22621159 | 1..54 | 92 | -> | Plus |
| 2R | 22622159..22622300 | 55..196 | 100 | -> | Plus |
| 2R | 22627800..22627948 | 197..345 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:44 Download gff for
UFO08915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18508608..18508664 | 1..54 | 92 | -> | Plus |
| arm_2R | 18509664..18509805 | 55..196 | 100 | -> | Plus |
| arm_2R | 18515305..18515453 | 197..345 | 100 | -> | Plus |
| arm_2R | 18515518..18515681 | 346..509 | 100 | -> | Plus |
| arm_2R | 18515868..18516062 | 510..704 | 100 | -> | Plus |
| arm_2R | 18519136..18519333 | 705..902 | 98 | -> | Plus |
