UFO08916.5prime Sequence
1144 bp (993 high quality bases) assembled on 2011-08-10
> UFO08916.5prime
CAGTCGACATGCTCACGTCTCAAAGTTGTTCATTTGTACGGCTGTTGATT
GCAAAGATGATATTGAGGAGCCTCCTACAAAACGTAGCTCGAATTCCTGA
GTTTGAACAACTGTGGCGGGATATTCTTTTCAATCCTAAAATGTTGCATC
AAACTTTTAACGGAATTTGGCAACTACTGCATATACGGACAAGTCGAAGG
TTTCTGCAATGCCGTCTGCTGCCTGAGATGGAACGAAAAATAAGCTTCTT
AGCATCTTCTGTTAAGTTTGGAAATCAGAAGAGATACCAAGATTGGTTTC
AGGACAAATACTTTGCTACACCTGAGTCTCATAGCTTGCGATCTGATCTA
ATTCGATTTATCATAAATGTCATCCATCCCACAAACGATATGTTGTGCTC
TGATATTATACCGCGATGGGCAATCATAGGTTGGCTCATCTCGTCCTGCA
CCAATCCAATCGCTTCTGCTAATGCAAAGTTGTCATTGTTTTATGATTGG
TTATTTTTTGATCCTGCCAAGGATAATATAATGAATATAGAGCCTGGAAT
TTTAGTTATGTACCACTCTATAAGAAATCATCCATTTGTTAGTAGCACGC
TGTTGGATTTCTTATGCCGTATTACAAAAAACTTTTTCGTAAAACATGAA
GATAAAATTCGCATTGGTGTTTATAATTCATTGAAATTAATTCTTGAAAA
GCAGGTGATACCAAATCTGCAACCACTTTTTGAGTCACCCAACTTGACAG
AGAACTGCGTAATTTAATAAGGGACATTTTAGAGAGTTTTTATCACCGCC
GGCTAATCACGGACAGCTACTGTTCACTTCCCTGCATCCAGTTCAGGGTC
ATATTTTAAAAAAGAGAGCGATCAAAGAATTTTACATTGTGAAACTTGAA
CTTCATGAAACTGGGCTCATAAATATTAGTGGGACAATCGATGAGAACAA
AAGATCTTACTCGTGCCAACGGATCAAGAATTTGAAAGTGTTTTAGCGAC
GAAACTGCTGAAATTTAAGAAGAGTCACAACTTGGAGACATTACGGAGGA
CGACGATGACTACATTATCGAGGTAGACTTAAAGAAAGCTAGGTGAACTA
GCAAGCATGACCGAATCTTTGATGCATTGTTACAGACCGTAACT
UFO08916.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS3-RA | 3382 | CG17665-RA | 785..1882 | 70..1144 | 4710 | 96.5 | Plus |
| IntS3-RA | 3382 | CG17665-RA | 113..174 | 9..70 | 310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4238516..4239158 | 711..69 | 3200 | 99.8 | Minus |
| 2R | 25286936 | 2R | 4238273..4238465 | 891..702 | 815 | 98.4 | Minus |
| 2R | 25286936 | 2R | 4238034..4238198 | 1060..901 | 470 | 92.7 | Minus |
| 2R | 25286936 | 2R | 4242761..4242822 | 70..9 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:55:17 has no hits.
UFO08916.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:32 Download gff for
UFO08916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17665-RB | 118..1210 | 9..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:46 Download gff for
UFO08916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS3-RA | 113..176 | 9..69 | 95 | <- | Plus |
| IntS3-RA | 785..1816 | 70..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:25 Download gff for
UFO08916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS3-RA | 113..176 | 9..69 | 95 | <- | Plus |
| IntS3-RA | 785..1816 | 70..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:25 Download gff for
UFO08916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4238273..4238462 | 705..891 | 98 | <- | Minus |
| 2R | 4238523..4239156 | 71..704 | 100 | <- | Minus |
| 2R | 4242761..4242822 | 9..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:46 Download gff for
UFO08916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 125778..125967 | 705..891 | 98 | <- | Minus |
| arm_2R | 126028..126661 | 71..704 | 100 | <- | Minus |
| arm_2R | 130266..130327 | 9..70 | 100 | | Minus |
