UFO08917.5prime Sequence
1114 bp (1011 high quality bases) assembled on 2011-08-10
> UFO08917.5prime
CAGTCGACATGTCTTCGGCCAGAGACCTTATCAAAGTCGACATAGAATGG
GGCATGGAGCGCCTGGTGCGAGCTCAGCAAGTGGTGGAGCTGCGGCCCTA
TGACATCGAGTCCTGGAGTGTCATGATCCGAGAGGCCCAAACGCGGCCAA
TCCACGAAGTACGCAGTCTTTACGAGTCGCTAGTTAATGTGTTTCCGACA
ACCGCTCGGTACTGGAAGCTATACATTGAGATGGAGATGCGCAGCCGGTA
CTATGAACGCGTGGAGAAACTTTTTCAACGCTGCCTAGTCAAGATTTTGA
ACATCGACCTCTGGAAGCTCTATCTTACCTACGTGAAGGAAACCAAGTCG
GGTCTAAGTACTCACAAAGAAAAAATGGCCCAGGCTTATGATTTTGCACT
GGAGAAAATCGGCATGGATCTACACTCGTTCAGCATCTGGCAGGATTACA
TATACTTTCTGCGGGGCGTTGAAGCAGTGGGCAACTATGCAGAGAACCAA
AAGATCACAGCAGTGCGCCGCGTCTATCAAAAGGCTGTAGTCACACCTAT
CGTGGGCATCGAGCAGTTGTGGAAGGACTATATCGCATTCGAGCAAAACA
TAAACCCGATTATATCAGAGAAGATGAGTCTGGAGCGATCTAAGGATTAC
ATGAACGCTCGTCGTGTTGCCAAAGAGTTGGAATACCACACAAAGGGTCT
CAATCGCAATCTGCCAGCCGTCCCACCCACACTCACAAAAGAGGAGGTGA
AGCAAGTGGAGCTGTGGAAGCGCTTTATCACGTATGAGAAGTCTAATCCC
TTGCGCACTGAAGATACGGCCCTAGTAACCCGTCGTGTCATGTTCGCCAC
GGAGCAATGTTTGCTGGTGCTCACCCACCACCCGGCAGTGTGGCACCAGG
GCCTCCCAATTCCTGGACACCAGTGCTCGCGTGCTCACGAAAAAGGCGAC
GTCCAGGCGGCCAGATTTTTGGCGGACGGGTGGTGCTAATATTACTGGAC
GGTCTATAAACGGCGTGCTAACCCGAATTGCGTTGCTATATTTTGCCTAT
GCGGACTTGGAGAAGACGGCTCAGTTACGAAAGGTGCCAACTATTGTACA
ACAAGCCTGTAAGT
UFO08917.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(f)-RG | 2668 | CG17170-RG | 382..1480 | 9..1106 | 5125 | 98.3 | Plus |
| su(f)-RE | 2574 | CG17170-RE | 288..1386 | 9..1106 | 5125 | 98.3 | Plus |
| su(f)-RF | 2909 | CG17170-RF | 288..1227 | 9..948 | 4655 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23097793..23098115 | 45..367 | 1615 | 100 | Plus |
| X | 23542271 | X | 23098614..23098918 | 644..948 | 1430 | 99.3 | Plus |
| X | 23542271 | X | 23098280..23098556 | 368..644 | 1385 | 100 | Plus |
| X | 23542271 | X | 23099218..23099327 | 948..1058 | 325 | 88.3 | Plus |
| X | 23542271 | X | 23097696..23097732 | 9..45 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:55:21 has no hits.
UFO08917.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:33 Download gff for
UFO08917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(f)-RE | 300..1412 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:48 Download gff for
UFO08917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(f)-RE | 283..1395 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:27 Download gff for
UFO08917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(f)-RE | 283..1395 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:27 Download gff for
UFO08917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23098280..23098555 | 368..643 | 100 | -> | Plus |
| X | 23098614..23098917 | 644..947 | 99 | -> | Plus |
| X | 23097793..23098115 | 45..367 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:48 Download gff for
UFO08917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 76611..76933 | 45..367 | 100 | -> | Plus |
| XHet | 77098..77373 | 368..643 | 100 | -> | Plus |
| XHet | 77432..77735 | 644..947 | 99 | -> | Plus |
