UFO08918.5prime Sequence
1118 bp (1014 high quality bases) assembled on 2011-08-10
> UFO08918.5prime
CAGTCGACATGAGCGCCACGCCGCCGGACCTACTTTCGTTGGCGGCGTCC
CGAGAAGTCTCGGCCGCCGTCGCAGTCGCCGCCTCTGCCAACGGAGGCAG
CGGCAGAAGCGCTGATAAGGAGCGTTCACGTTCCAGAGATCGTGGGCGGG
ACAAGGATAAGGATCGGGACAAGGACAGGAAGAAGAGGGACAAAGACAGT
AGGGACCGCGACAGTCGCCGGCGGGACGATCGCGGCGACCGAGATCGTGA
CCGGGAACGCGACAGGGATTCCCGCTCGCACCGCAGCAAGTCGCGCAATT
ACGACGACGGAGACAGACGAAGAAAGCGATCGCGCAGCAGGGATCGTGAT
CGTGACCGCAAGCGGGACAGAGATCGCGACTCCCGCTCCAGGCGCAGTAG
CTCGCGGGGTGGACGTGATGATTATGACCGGAGTCGTCGACGGCGCTCAC
GCAGTCGCAGTTACGAGCGTCGACGCAATGATCGAGGCAGTCAGAGAGAT
CAACGAGACCAGCATTCGCAAAGAAGCAGTCGGGAACGCACACATGTGAA
CCCCTTCGACACATCCAACAGTCGAAACTCTCTGAATCAGGATCACGATC
AATCCAGAATCCCGTCGCTCTTCGACCGACAGCAGGGATTGGAAACCATC
AGGGAGGAAGGACGTGAGCAGCGGTTTGATCTTACTCAGACCATCCAGGA
GCTAATGGGCAATGCTGGAGGCAACAAAGGATTCGCCTCGTTCTTTAACA
GCCAGAACAGCAACGACTCCACCAGCAATGGAGCATTCGATAACTCAGCG
GACAGCGCTGCGGAGCGAAAGAGGAAGCGGAAGTCTCGCTGGGGCGGCAG
TGAAAACGACAAGACCTTCATTCCTGGAATGCCCACAATTCTGCCCTCCA
CCCTGGACCCGGGCACAGCAGAGCCTACCTAGTTCAATTTCAAATCGAGG
AGATTAGTCGCAAGCTGCGAACCGGCGATTTGGGCATCACGCAGAATTCG
GAAGAAAGATCGCCCTCCGCGGAGCCATTTATAGTTCTGATGGCAAGCCG
TTGACACACCGTGATCGCTACAGGAAAGACTGGAAAGACACGTCATCAAC
TGATCGTCAAATGCAACG
UFO08918.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SF1-RA | 2784 | CG5836-RA | 204..1314 | 8..1111 | 5180 | 98.4 | Plus |
| SF1-RB | 1533 | CG5836-RB | 204..1205 | 8..1008 | 4910 | 99.5 | Plus |
| SF1-RC | 2708 | CG5836-RC | 204..1129 | 8..932 | 4560 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17540974..17541586 | 186..798 | 3065 | 100 | Plus |
| 3R | 32079331 | 3R | 17540624..17540804 | 8..188 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 17541665..17541780 | 797..912 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 17542413..17542490 | 931..1008 | 360 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:55:26 has no hits.
UFO08918.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:33 Download gff for
UFO08918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SF1-RA | 202..1321 | 8..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:51 Download gff for
UFO08918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SF1-RA | 204..1323 | 8..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:29 Download gff for
UFO08918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SF1-RA | 204..1323 | 8..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:29 Download gff for
UFO08918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17540624..17540803 | 8..187 | 100 | -> | Plus |
| 3R | 17540976..17541586 | 188..798 | 100 | -> | Plus |
| 3R | 17541667..17541801 | 799..932 | 97 | -> | Plus |
| 3R | 17542415..17542490 | 933..1008 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:51 Download gff for
UFO08918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13366346..13366525 | 8..187 | 100 | -> | Plus |
| arm_3R | 13366698..13367308 | 188..798 | 100 | -> | Plus |
| arm_3R | 13367389..13367523 | 799..932 | 97 | -> | Plus |
| arm_3R | 13368137..13368212 | 933..1008 | 97 | -> | Plus |
