UFO08919.5prime Sequence
1119 bp (1038 high quality bases) assembled on 2011-08-10
> UFO08919.5prime
CAGTCGACATGGCTTTCCGTGGTAACCAGAACCGCAACCGCAATTTTGGA
GGTGGCAACAACAACTATGGTGGACCCATGGGCGCCAACCGCATGGGCGG
TATGAACATGTCGCCTTGGGAATCGCAGAATCCCGGCGGCGGACAGTTTG
GTAACAACATGCGACAGGGTGGCGGTCAGATGAACGCCCAGGCCATCAAC
TTGGCCAACAATCTGCTGAACAATCTGTTCAGGAACCAGAATCCACCATC
GCTTCTCGACTTGCCCCGCGGCGGCGGTGGCATGGGAAATCGCAACCAAC
GTGGTGGCCCGATGGTCAGTCGCGGCGGCGGTGCCGGCAATCGTCTCAAT
AACCGTCGTGGCCAGGGAGGTGGCTTCCAAAATCGTGGCGCCACTGGTAG
TGGACCCAAGCCCCCGCCAAAGCAGGGCGGCGGCGGTATTCGCAAGCAAA
ATGCTTTTGATCGTGCCAAGAAACTTTTGGCTAAAAATGCCAACCAAAAT
AAAAAGAAGGAACCCACTCCTGGCGAAAAGAAAATCGAGAGCCCTACCAA
GGAGTCTCCATACGCTAGTGTGCCGAACGACATGTTCTACTGCCATCTGT
GCAAGAAGCACATGTGGGATGCCAACTCTTTCGAGAACCACATCAAGGGC
CGCACCCATCTGATGATGCGTGAGGGCATTGAGGAGAGCTATCGCCTCAA
GGCCAACATGATCCGTCAGGAGGCTAAGATCGCAGAGCAGCTCAAGTCGA
TCGAGTTTGACCGCTTGAAGCGCATGGGCAAAAGCAAGCAGCGTCAGCTG
GACTACTGCACCATGTGCGACCTGAACTTCCATGGTCACATCTCGACCCA
TCGCAAGTCGGAGGGACATTTGCAGCTGAAGAAGTTCTTGCACCCCAAGT
GCATTGAGTGCAACAAGGAGTTCGCCACTCGCATTGACTACGATACTCAT
CTGCTGTCCGCCGAGCATCTGAAGAAGGCTGCCGAAACACACCAAGGTGG
GGTGAGCGCAAGCGCCAGACCTTGCCCATCAGCACCGAAGAAAAGGAGAC
CGCGATTTGCGCTGCCAATGCCAGAGAGCGTTCAAGAAGGAGGCTACATC
GATGGCGAGCTAAAGAGGT
UFO08919.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pep-RD | 2626 | CG6143-RD | 141..1198 | 7..1062 | 5180 | 99.5 | Plus |
| Pep-RC | 2691 | CG6143-RC | 206..1263 | 7..1062 | 5180 | 99.5 | Plus |
| Pep-RB | 2792 | CG6143-RB | 307..1364 | 7..1062 | 5180 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17639531..17640055 | 1062..540 | 2420 | 98.7 | Minus |
| 3L | 28110227 | 3L | 17643363..17643667 | 311..7 | 1525 | 100 | Minus |
| 3L | 28110227 | 3L | 17641026..17641256 | 541..311 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:55:31 has no hits.
UFO08919.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:34 Download gff for
UFO08919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RD | 152..1231 | 1..1086 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:54 Download gff for
UFO08919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RB | 302..1381 | 1..1086 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:31 Download gff for
UFO08919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RB | 302..1381 | 1..1086 | 98 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:31 Download gff for
UFO08919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17639538..17640053 | 542..1054 | 98 | <- | Minus |
| 3L | 17641026..17641255 | 312..541 | 100 | <- | Minus |
| 3L | 17643363..17643672 | 1..311 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:54 Download gff for
UFO08919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17632638..17633153 | 542..1054 | 98 | <- | Minus |
| arm_3L | 17634126..17634355 | 312..541 | 100 | <- | Minus |
| arm_3L | 17636463..17636772 | 1..311 | 99 | | Minus |
