UFO08921.5prime Sequence
1100 bp (1007 high quality bases) assembled on 2011-08-10
> UFO08921.5prime
CAGTCGACATGAGCGACTTCCAGCAACAAGGCATCAATCAATCGCAGGCA
CTCGCGCAGGCAATTCAGCGTGCCAAGCAGATCGCAGCCAAGATCCAGCC
CAGCCAGCAGGGCGGCGGCACAGCGGGTCCATCGCCACCGTCTTCGGGTG
GAGGGCCTGGCTTTAAGCGTATCAACGACGACGGCGACAGCGGTCCGGAA
TCCAAACGCTCCTTGGGCAGTCCGGAGTACGCCAACAACAGCTCCAACAT
GAGCAGCGGTAGCGGGGGTGGTGGTGGCGGCGGCGGAGGTCCCGGCGGTG
CCAGTATTACTCAGGCAATCGCCCAGGCTGCTGCGGTAGCCGCTCGTTTG
GCCGCCTCGGCGGGAACAAGCTGTGAGGAGCAGATCCGTCTGCCCGAATC
GGTAGCCGGCGCCTTTATGGGTCGCTCCAGTAACGACACCATCACCCACA
TCCAGGCCGAGTCCGGTGTAAAAGTGCAGGTCATGCAGGATCAAGATCGC
GTTATCATGTTGCGTGGTCAAAGGGATACAGTCACTAAGGGGCGCGAAAT
GATTCAGAACATGGCCAATCGGGCTGGCGGGGGACAGGTGGAGGTGCTGT
TGACGATCAATATGCCGCCACCGGGACCTAGCGGGTATCCACCTTACCAG
GAGATCATGATTCCGGGCGCCAAGGTGGGCTTGGTCATTGGCAAGGGCGG
CGATACCATTAAACAGCTGCAGGAGAAGACCGGAGCCAAAATGATCATCA
TCCAGGACGGACCAAACCAGGAGCTGATCAAACCCCTTCGCATATCCGGC
GAGGCGCAGAAGATAGAGCACGCCAAGCAGATGGTGCTCGATCTGATTGC
CCAGAAGGATGCACAGGGTCAGCAACACGGTGGTCGGGGCGGCGGCGGAG
TGCGGCGGTCCAGGCATGGGATTCAATAACTTAATAATGGCAACGGCGGC
GAGAGCACCGAAGTCTTTGGTGCCCAAAATTGCAGTGGCGTGTCATCGGC
AAGGCGGCGGACTGATTCGTAAATACAAACTGGGGTGCGGCTGCAACTGG
CAGTCATTCAAGGAAGAACGACCGAAATGGGGCGAACGCCAGTCCCTCAT
UFO08921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psi-RC | 3435 | CG8912-RC | 318..1396 | 9..1081 | 4945 | 98.1 | Plus |
| Psi-RB | 3227 | CG8912-RB | 318..1396 | 9..1081 | 4945 | 98.1 | Plus |
| Psi-RA | 5687 | CG8912-RA | 466..1475 | 78..1081 | 4600 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16866339..16867249 | 986..78 | 4365 | 99.3 | Minus |
| 2R | 25286936 | 2R | 16867326..16867397 | 80..9 | 360 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 11096..11144 | 252..301 | 112 | 72 | Plus |
UFO08921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:35 Download gff for
UFO08921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psi-RC | 310..1379 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:58 Download gff for
UFO08921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psi-RB | 311..1380 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:34 Download gff for
UFO08921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psi-RB | 311..1380 | 1..1065 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:34 Download gff for
UFO08921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16866256..16867246 | 81..1065 | 98 | <- | Minus |
| 2R | 16867326..16867404 | 1..80 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:58 Download gff for
UFO08921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12753761..12754751 | 81..1065 | 98 | <- | Minus |
| arm_2R | 12754831..12754909 | 1..80 | 95 | | Minus |
