UFO08923.5prime Sequence
1117 bp (996 high quality bases) assembled on 2011-08-10
> UFO08923.5prime
CAGTCGACATGAGTGCTGCCGGCTGGCTTGATATGAATGCAGCTCTTCAG
AACCTCGACTCTCCGCCGGAGACAGTGAAAAAGGCCAGAACCAAACGGAG
GAGCAGCTATGCCGGACGAACTACTGCAACGGCCGGAGTACATGGACGTG
GCAGCATTGGTACCATAAGTTCTGGAATAATCAAATCATTTCGGGAACGT
TTCCTCAGCAACTCATCTGGGGACTCCGGCAAGTATAGAAAACTTAGGCA
AAGGGATGCCGAGTCTGGCAGAATGGAAGCCAGTGGATCAAGTTCATCGG
GAGAAAATGAGGACCCCAGCAGCAGTAGTAGTGTCGAGGATCTCTTTGCC
AATGAGGCAGAACGTCGCAATTGGCACAGGAAAACCTCGGAGAAGCGACG
AAGGAATGCCAGAAAAAAGAATCTAATGCATACCAAGGAGAAGAAGCGCC
GGGTGCGAATCATCCTGACTGTTGTAACCACGGTCATAGCGGTTGCTCTA
TTGGCCACGGCCCTGGTTTTCATTCTCCGGACGGATGAAAAGGATGCCGA
CGACTCTGACTCAAACTCAAACAATGCCATCGATTTGGAGGATGTGCTAA
GTGGTCAACTATATGCCAAGCGATTCAACGGCAGCTGGAGCAATGGAAAC
AGTCTCATTTACAAGGAGAATACGTCCATCATGGAGTTCGATGCCAAGAC
GGGTGAACGTTCCATCCTGCTGGAAGATGCGCAACATTATGTCCTGTACG
AAAAGTCCGCCGATGGGGAGTTCCTTTTGCTGGCAAAGAACTACAAGAAG
AACTTCCGGTACAGCTTTCTAGCTGAGTACGATCTGTACAATCTGAACAC
AAAAGAATTCATCCAGTTGACCATCCCAAACGAGCAGCACTACCTGAGCA
TGGTCCAATGGTCACCGGGTGGGAAATGCCCTTGTGATCAATTACGATCG
GAATCTGTACTACAAGAGAGTGCATTGCGCAGAGATTGCCCTCACTAGCG
ATGAACAGCGGGTTAACTGATGGCATTCTCGATTGGGTGTTACGAAGGAA
AAGATTCAAGCTCATGTGGCAACTGTCAACATCGGCACCCAAATGTCCTC
ATCAGTTCGACGATCGT
UFO08923.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ome-RE | 4109 | CG42280-RE | 564..1682 | 9..1114 | 5010 | 97.4 | Plus |
| ome-RG | 4070 | CG32145-RB | 933..1643 | 417..1114 | 2970 | 95.9 | Plus |
| ome-RF | 3356 | CG32145-RA | 220..929 | 418..1114 | 2965 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14680377..14680787 | 9..419 | 2055 | 100 | Plus |
| 3L | 28110227 | 3L | 14744530..14744900 | 674..1040 | 1500 | 97.3 | Plus |
| 3L | 28110227 | 3L | 14744187..14744443 | 418..674 | 1285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:54:56 has no hits.
UFO08923.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:30 Download gff for
UFO08923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ome-RE | 527..1588 | 1..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:37 Download gff for
UFO08923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ome-RE | 556..1617 | 1..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:18 Download gff for
UFO08923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ome-RE | 556..1617 | 1..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:18 Download gff for
UFO08923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14744189..14744443 | 420..674 | 100 | -> | Plus |
| 3L | 14744531..14744918 | 675..1058 | 96 | | Plus |
| 3L | 14680369..14680787 | 1..419 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:37 Download gff for
UFO08923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14737289..14737543 | 420..674 | 100 | -> | Plus |
| arm_3L | 14737631..14738018 | 675..1058 | 96 | | Plus |
| arm_3L | 14673469..14673887 | 1..419 | 99 | -> | Plus |
