UFO08925.5prime Sequence
1117 bp (1005 high quality bases) assembled on 2011-08-10
> UFO08925.5prime
CAGTCGACATGTGTCGCAGGCGTAAAGGAGGTCGTTGCACCAAGGGCACA
GCGGGCTTCGCTTACGTCGGCGGCGCATGCGTGGTGAACAAGCGACTGGA
GAAGGTGAACAGCGTGGCCATCATCGAGGACACCGGCGGCTTCAGCGGCA
TCATCGTGGCTGCCCACGAAGTTGGACATCTGTTGGGAGCGGTGCACGAC
GGTTCGCCACCGCCCAGCTACTTGGGCGGACCGGGCGCCCAGCGGTGTCG
CTGGGAGGATGGCTACATCATGTCCGATCTGCGTCACACGGAGCGGGGTT
TCCGATGGTCCGCCTGCACGGTGCAGAGCTTCCACCACTTCCTCAATGGA
GACACGGCCACCTGCCTGCACAACGCCCCTCATGAGGACAGCGCCCTGGG
TAGATCTCTGCCAGGAACCCTGCTCTCGCTGGACGCCCAGTGCCGCAGAG
ATCGGGGAACGTATGCCTGCTTCAAGGATGAGCGAGTGTGTGCCCAGCTC
TTCTGCTTCGACGCCCAGACGGGATACTGTGTGGCCTACAGGCCAGCGGC
CGAAGGATCGGCCTGCGGAAATGGTTATCACTGTCTGGATGGTCGTTGTA
CACCACTGCCCTCGAACATCATTCCCGATTACGGACACAACTATCGTTTA
GTCTACAATGTAACCAGCAGCAGCAGCAGCACCAGCAACGGGGGCAAAGC
AACAGCCACCGAGCAACAAGGACGAGAATCAGAGACAGCAGCAGCAGCAG
CAACAGGCGCAGCAGCAACTACAGGATGGGGCTGCCCGATGAAGAGAACG
AGGCGACTGCCGGCATTCCTGAGCAATGAAGCGATTTGAGCTGCAAAAAC
GTAAGTTCCCCACAACACCCACAGCAGCAACAAGTGCTGCGCAGAAATCA
GCACACCAGCACACCAGCAACATCGGCAACATCAGCAAGACCCACACCAA
CCACCGCCAAACCGATACCACCTCATCATTTCTTCGACGCGTACTTTTAA
AAACTGCCAGCCTTGCATGACGCTGGATCCGGCCAGCAGCCATCACCACC
ACCACCCACACCATCTCGTGTTCGTCGTCCGTCAGTCTCCGCAACAGGAG
CAGTCGCCAGCATCCGC
UFO08925.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9850-RE | 4642 | CG9850-RE | 2312..3416 | 9..1117 | 5010 | 97.5 | Plus |
| CG9850-RF | 3585 | CG9850-RF | 2312..2963 | 9..660 | 3260 | 100 | Plus |
| CG9850-RD | 4388 | CG9850-RD | 2312..2962 | 9..659 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23756119..23756551 | 1096..659 | 1460 | 94.6 | Minus |
| 2R | 25286936 | 2R | 23757695..23757926 | 578..347 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 23757987..23758151 | 346..182 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 23758474..23758603 | 183..54 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 23757415..23757494 | 658..579 | 400 | 100 | Minus |
| 2R | 25286936 | 2R | 23760621..23760667 | 55..9 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2403..2493 | 863..951 | 143 | 64.8 | Plus |
UFO08925.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:38 Download gff for
UFO08925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RB | 799..1892 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:07 Download gff for
UFO08925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RE | 2302..3399 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:43 Download gff for
UFO08925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RE | 2302..3399 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:43 Download gff for
UFO08925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23756114..23756551 | 659..1103 | 94 | <- | Minus |
| 2R | 23757415..23757494 | 579..658 | 100 | <- | Minus |
| 2R | 23757695..23757926 | 347..578 | 100 | <- | Minus |
| 2R | 23757987..23758151 | 182..346 | 100 | <- | Minus |
| 2R | 23758476..23758602 | 55..181 | 100 | <- | Minus |
| 2R | 23760622..23760672 | 1..54 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:07 Download gff for
UFO08925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19643637..19644074 | 659..1103 | 94 | <- | Minus |
| arm_2R | 19644938..19645017 | 579..658 | 100 | <- | Minus |
| arm_2R | 19645218..19645449 | 347..578 | 100 | <- | Minus |
| arm_2R | 19645510..19645674 | 182..346 | 100 | <- | Minus |
| arm_2R | 19645999..19646125 | 55..181 | 100 | <- | Minus |
| arm_2R | 19648145..19648195 | 1..54 | 92 | | Minus |
