UFO08928.5prime Sequence
1120 bp (1019 high quality bases) assembled on 2011-08-10
> UFO08928.5prime
CAGTCGACATGAGCACGGACGATCTGCTGGTGCGCCGCGAAAGGAGTGAA
GACTCCCAATCCTCGAGTGTCTCCATTCCGGTTACGCCCACCACCGGAGG
TGCCGCGCCTGCGCCCAGCGCCCCCACGTCATCGCTGGACCGCCTGCGGA
ACACCTTCCGGCGCACGGAGAGCATCTCCTCGCAGATCTTCAGCCACATA
TCCACACAGTTCTCGAATGCGGCCGCAGCAGCCGCCTCTTCCGAGGTAAT
CGATGGCACCACCACGTACCCGTATCCCGACGAGCCCGCACCACCTGTTG
TACCTGTTGCGCCGGACACGGTGGCGAGCGCCAGTGCTTCATCCCCGTCG
CCATCGAAACTGAAAGCAAAGCGACTGAAACGCGCCCGGGACACGGCGGA
AATTGAGCGCAGTAATCTGGTGAATATCTGCAAGCTGGTGGTCAAGGAGC
TGTTGGAGCAGTCGCTGCGTTATGGTCGCATGCTGGACTCGGATCACCTG
CCGTTGCAGCATTTCTTCATCGTCATCGAGCATGTCCTGGGGCATGGATT
GCGCCCGAAGAAGGGTCTGCTGGGACCGAGGAAGGAATTGTGGGATCTGC
TGCAGAGCGTCGAGCATTACTGCCCGGAGGCGCAGGACATTACGGCGAGT
GTAAGGGATCTGCCCACCGTTCGTACCCACATTGGCCGCGCTCGAGCCTG
GCTGAGGATCGCTTTGATGCAAAAGAAGCTATCGGATTACCTGCAGGCAC
TCATCGAGCACCGGGAGGATTCACTCTTCGACTACTATGAGCCACATGCT
CTGATGATGAGCGATGAGATCGTTGTGATAATGGGCATTTTGGTGGGCTT
AAACGTGATCGATTGCAATCTGTGCGTCAAGGAGGAGGATCTGGGACTCA
CAGCAGGCGTCATCGACTTCTCGTTTTACCTGCGTTCAAGCTCGAGAAAA
CGCCGATGCGGCTCCAGAAGACAGTGCTCCGCCTGCTCTGCTGGATGCCA
CTGGGGCAGGCAACATGATTGGCGGTGGCTGGACACCAAAAACATACTTG
GGGGAGCTCACAGGCATTCTAACGCGCACTGTGGGGCAATCCTCGCAGGC
CAAGTAAAGTCTTTACGACC
UFO08928.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31064-RB | 2687 | CG31064-RB | 181..1292 | 4..1120 | 5025 | 97.5 | Plus |
| CG31064-RA | 2985 | CG31064-RA | 181..1292 | 4..1120 | 5025 | 97.5 | Plus |
| CG31064-RG | 3111 | CG31064-RG | 985..1716 | 384..1120 | 3140 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27233248..27233682 | 818..384 | 2175 | 100 | Minus |
| 3R | 32079331 | 3R | 27238525..27238905 | 384..4 | 1890 | 99.7 | Minus |
| 3R | 32079331 | 3R | 27232984..27233187 | 1021..817 | 820 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:56:02 has no hits.
UFO08928.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:39 Download gff for
UFO08928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31064-RB | 174..1209 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:09 Download gff for
UFO08928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31064-RA | 178..1213 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:44 Download gff for
UFO08928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31064-RA | 178..1213 | 1..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:44 Download gff for
UFO08928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27233000..27233185 | 819..1005 | 97 | <- | Minus |
| 3R | 27233248..27233681 | 385..818 | 100 | <- | Minus |
| 3R | 27238525..27238907 | 1..384 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:09 Download gff for
UFO08928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23058722..23058907 | 819..1005 | 97 | <- | Minus |
| arm_3R | 23058970..23059403 | 385..818 | 100 | <- | Minus |
| arm_3R | 23064247..23064629 | 1..384 | 99 | | Minus |
