UFO08929.5prime Sequence
1124 bp (1014 high quality bases) assembled on 2011-08-10
> UFO08929.5prime
CAGTCGACATGCGCGATAACGAAGATGATCTCTACCGGGAGCGTCTGCCG
AACGTTTGCGGTGCCGTGAGCTCAAAGGCGAGGAGCTGCTGCAGCATGCG
CTCCGTCCACAGATACCTGCCCGTCACCGATTGGCTGCCCAAGTACCAGT
TGAACTTCCTGGCCATGGATGTGGTGGCGGGTCTCACCGTGGGCCTCACA
GCCGTGCCACAGGCCATAGCCTACGGAGCTGTGGCCAATCTGCCACCAGC
CTATGGGCTCTACTCCGCTTTTATGGGTGGATTTGTGTACATACTGCTTG
GAACTTGTAAGGATATCACAGTGGGCCCTACGGCCATCATGGCGCTTATG
GTGCAGCCATATGTGGACGGCAACCCAGCGTATGCGGTGCTAATATGCTT
TCTGTCCGGCTGCATCATCACCCTAATGGGTTTACTCAATCTCGGAGTGC
TCATGCGGTTCATATCGGTGCCGGTGACCACGGGTTTTACGATGGCAGCC
GCCCTAACCATTGCCACCGGCCAGGTTAATAGCCTCTTTGGCATTAGCAG
TAGTGCCAGTGGGTTCCTTAACAGCTGGATATACTTCTTCGGTCACATAA
CACAAACACGCCGAAATGATGCCATCCTCGGCTGCTGCACACTTGTGCTC
CTGCTGCTCATGAGGCAACTGAAAAACCTAACTTTCGGCTTCAAAAGCGT
GTGGAAGTATATTTCACTGGCCCGCAATGCTGTGGCCGTGTTAATTGGCA
TACTCCTGTGCTATCTTCTGAAGAACGATGGCAAACTGCCCTTTCTAGTC
AGCGGCAGCATCACTCCAGGCCTGCCGCCTTTCAAGCTTCCCCCTTTTCA
CACGGAGGATCCAGAGACTGGAGAACCATTAGCTTCGTGGCATGGTATCG
AACGTAGCACTGCCCTGTGTCCATACCACTGTTGTCATATTGGAGAGCAT
AGCTGTGGCCAAGCCTTCTCCAAGGCCAGATAGTGGACGCATCGCAAGGA
GATGATTGCCCTGGGGCGTCAGCAACATCCTCAGCAGCTTCTTCTCCTCC
ATGCTATCACTGGATCTTTACAAGACAGCATCACCACGCCAGTGGAGATA
AACCCGCCTGGGTGGTGCGTTACG
UFO08929.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7912-RA | 1992 | CG7912-RA | 155..1282 | 3..1119 | 5200 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30007532..30007873 | 665..324 | 1710 | 100 | Minus |
| 3R | 32079331 | 3R | 30007932..30008234 | 325..23 | 1515 | 100 | Minus |
| 3R | 32079331 | 3R | 30007155..30007458 | 963..665 | 1270 | 98.4 | Minus |
| 3R | 32079331 | 3R | 30006991..30007082 | 1066..974 | 305 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:56:07 has no hits.
UFO08929.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:39 Download gff for
UFO08929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7912-RA | 152..1287 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:11 Download gff for
UFO08929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7912-RA | 152..1287 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:46 Download gff for
UFO08929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7912-RA | 152..1287 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:46 Download gff for
UFO08929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30007532..30007872 | 325..665 | 100 | <- | Minus |
| 3R | 30007933..30008232 | 25..324 | 100 | <- | Minus |
| 3R | 30009014..30009035 | 1..24 | 91 | | Minus |
| 3R | 30007148..30007457 | 666..969 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:11 Download gff for
UFO08929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25832870..25833179 | 666..969 | 98 | <- | Minus |
| arm_3R | 25833254..25833594 | 325..665 | 100 | <- | Minus |
| arm_3R | 25833655..25833954 | 25..324 | 100 | <- | Minus |
| arm_3R | 25834736..25834757 | 1..24 | 91 | | Minus |
