UFO08930.5prime Sequence
976 bp (942 high quality bases) assembled on 2011-08-10
> UFO08930.5prime
CAGTCGACATGGAATGCCTGCCGATGAGCAGTGCTGCCCATCACCCACAT
CTGATGGCGGGTGCATCGGCGGTAGGAGCCGTTTCCGCCTCTCCCACGGC
GACCGTGGTGGTGGGTGCCACGTATCCGCACCACCTGCACCACCACCACT
TGAGCCACCACACGCCGTACAGCAATAGCTACGGGAGCCACCACATACAC
AGCGAGCAAACCAAGTCGCTGCAGGAGCTGCAGCACGAGGTTGGCGCTCT
GCTGGAGTTCCGGGACCTGGTCATAGAAACTTTTCCCGACCTCAAGCACA
AGATGGCCTCCATGTCCGCAACGCCCTCGACTCCCACGTCTTCGGTGGGT
GCCATCGGTGGCAGTCACTCGGTAGGTGGCGGCAGCTCCTCTCTGGCCAC
CAGACGTGAGTGGGAGCCGGGCATACGGATGAAGCGAAAACAGTCGCACA
AAGAACCGTCCACGTCGTCAGCGGCAGCTGCTCCTTCCTCCGGAGCTGAG
GCGTCGTCCTCGTCGCTGACACGCAGCCGTAGCAACTCGCACAGCGGCAA
GAAAGAGCCAAAGAGCGGAGAGAACAACAACGGAAGCGTTGTGCAAGACT
CCGGCTTCTCAACGGAGACCAGTTCCTCCAAGGAGGGCCACAGTGCCTCC
TCCACCAACGGTGCTATGACGGTGGCCATAGCAGCGAATCGCCTGAGCTG
CGCGGAATCGGACGATGAGTTGCTCAACCTGCTGGACGTTATTCACCGCA
AGTCCAATCGATTACGCGAGGAAGTGGAGCACTTGCAGAGCTATGAGCGC
CAGCACGGGGATGCTCAGAAGACAGGAGGCGAACGCCAGGGTGCGAGCAA
GGAGGGAATGACAGCGCATCAGTTCCGAGAGCAGGTGAGCGATAAATTCG
CGAGGATATCAACACCTGCGCAGGGAGCGCGTCGTCTGCTGACAGTGGCC
CAAATGGAAGCGGAACGCTGACCGAA
UFO08930.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jvl-RC | 3889 | CG43162-RC | 895..1868 | 8..974 | 4560 | 98.4 | Plus |
| jvl-RE | 4993 | CG43162-RE | 378..1351 | 8..974 | 4560 | 98.4 | Plus |
| jvl-RG | 4547 | CG43162-RG | 378..1351 | 8..974 | 4560 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14788224..14788619 | 8..403 | 1980 | 100 | Plus |
| 3R | 32079331 | 3R | 14788696..14788968 | 401..673 | 1365 | 100 | Plus |
| 3R | 32079331 | 3R | 14789025..14789287 | 671..931 | 1125 | 97 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:56:11 has no hits.
UFO08930.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:40 Download gff for
UFO08930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3563-RC | 855..1801 | 1..944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:13 Download gff for
UFO08930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jvl-RG | 338..1284 | 1..944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:47 Download gff for
UFO08930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jvl-RG | 372..1318 | 1..944 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:47 Download gff for
UFO08930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14789026..14789302 | 672..944 | 96 | | Plus |
| 3R | 14788218..14788619 | 1..403 | 99 | -> | Plus |
| 3R | 14788699..14788966 | 404..671 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:13 Download gff for
UFO08930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10613940..10614341 | 1..403 | 99 | -> | Plus |
| arm_3R | 10614421..10614688 | 404..671 | 100 | -> | Plus |
| arm_3R | 10614748..10615024 | 672..944 | 96 | | Plus |
