UFO08931.5prime Sequence
1118 bp (1021 high quality bases) assembled on 2011-08-10
> UFO08931.5prime
CAGTCGACATGCCTGCTATTGGAATCGATCTGGGCACCACCTACTCCTGC
GTGGGTGTCTACCAGCATGGCAAGGTTGAGATTATCGCCAATGACCAGGG
CAACCGCACCACGCCGTCCTACGTGGCTTTCACAGACTCGGAACGCCTCA
TTGGTGATCCGGCCAAGAACCAGGTGGCCATGAACCCCAGAAACACAGTG
TTTGACGCCAAGCGACTCATCGGCCGAAAATACGACGATCCAAAAATCGC
AGAGGACATGAAGCACTGGCCTTTCAAAGTTGTAAGCGACGGCGGAAAGC
CCAAGATCGGGGTGGAGTATAAGGGTGAGTCCAAGAGATTTGCTCCCGAG
GAGATCAGTTCGATGGTGCTGACCAAGATGAAGGAGACGGCGGAGGCGTA
TCTGGGCGAGAGCATCACGGATGCAGTCATCACAGTTCCAGCTTACTTCA
ACGACTCTCAGCGCCAGGCTACCAAAGACGCCGGTCACATCGCCGGCCTG
AATGTGCTCCGCATCATCAATGAGCCCACGGCGGCAGCATTGGCCTACGG
ACTGGACAAGAACCTCAAGGGTGAGCGCAATGTGCTTATCTTCGACTTGG
GCGGCGGCACCTTCGATGTCTCCATCCTGACCATCGACGAGGGATCTCTG
TTCGAGGTGCGCTCCACAGCCGGAGACACACACTTGGGCGGCGAGGACTT
TGACAACCGGCTAGTCACCCACCTGGCGGAGGAGTTCAAGCGCAAGTACA
AGAAGGATCTGCGCTCCAACCCTCGCGCCCTACGACGCCTCAGAACAGCA
GCTGAACGGGCCAAGCGCACACTCTCCTCTAGCACGGAGGCCACCATCGA
GATCGACGCATTGTTTGAGGGCCAAGACTTCTACACCAAAGTAAGCCGTG
CCAGGTTTGAGAGCTGTGCGCGGACCTCTTCCGCAACACCCTGCAGCCTG
TGAGAAGCCCTCACGATGCCAAGATGGACAAGGTCAGATCCACGACATCG
TGCTCGTCGGCGGATCCACCTCCGCATCCCAAGGGGGCAAAGTCTGGCTG
CAGGAGTTCTTTCCCGGCAAAACCTCAGCTTATCCATTCACCAGACGAGC
ATGGGCTACCGGAGTCTT
UFO08931.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp70Ba-RA | 2324 | CG31449-RA | 220..1314 | 9..1099 | 5090 | 98.3 | Plus |
| Hsp70Bb-RA | 2347 | CG31359-RA | 243..1337 | 9..1099 | 5075 | 98.2 | Plus |
| Hsp70Bc-RA | 2386 | CG6489-RA | 243..1337 | 9..1099 | 5060 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12466492..12467557 | 1072..9 | 4875 | 98.6 | Minus |
| 3R | 32079331 | 3R | 12506035..12507116 | 9..1087 | 4860 | 98.2 | Plus |
| 3R | 32079331 | 3R | 12509318..12510399 | 9..1087 | 4845 | 98.2 | Plus |
| 3R | 32079331 | 3R | 12502752..12503833 | 9..1087 | 4830 | 98.1 | Plus |
| 3R | 32079331 | 3R | 11955208..11956289 | 1087..9 | 4380 | 95.3 | Minus |
| 3R | 32079331 | 3R | 11958789..11959870 | 9..1087 | 4380 | 95.3 | Plus |
| 3R | 32079331 | 3R | 24056164..24057104 | 948..9 | 1865 | 80.1 | Minus |
| 3R | 32079331 | 3R | 15244372..15245244 | 12..887 | 1240 | 76.4 | Plus |
| 3R | 32079331 | 3R | 13045581..13046163 | 170..752 | 920 | 77.2 | Plus |
| 3L | 28110227 | 3L | 13975966..13976596 | 254..887 | 555 | 72.9 | Plus |
| 3L | 28110227 | 3L | 13974590..13974767 | 19..196 | 440 | 83.1 | Plus |
| X | 23542271 | X | 11803871..11804160 | 637..345 | 440 | 77.5 | Minus |
| 3R | 32079331 | 3R | 13044979..13045131 | 24..176 | 360 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:56:16 has no hits.
UFO08931.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:41 Download gff for
UFO08931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp70Ba-RA | 214..1303 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:14 Download gff for
UFO08931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp70Ba-RA | 212..1301 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:50 Download gff for
UFO08931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp70Ba-RA | 212..1301 | 1..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:50 Download gff for
UFO08931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12506027..12507116 | 1..1087 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:14 Download gff for
UFO08931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8331749..8332838 | 1..1087 | 98 | | Plus |
