UFO08932.5prime Sequence
1161 bp (1030 high quality bases) assembled on 2011-08-10
> UFO08932.5prime
CAGTCGACATGTGGAAAACGTTGTGTTTGCTGCTTCTCTTGACGGCCACC
TGCAGCGCAGGACCCCTGTCCGCCCACCAGAAGAGGAAAGCACCCGTGAC
GCGTGAGGAGCCTGTCCCAGCTGAGGTGGAAATGCCGGAACAGACCGAAA
CGGAGGATGAGGAGGCTCCAGCGGAAGCAGCTTCCATGGGAACGCTCACC
CTGCCCAGCAATGCCACCTCCATTCGCTCGGACATCACGGATAACTTCTC
GTGTGTCAACAAGACCTATGGCTACTATGCCGATGTGGAGAACGACTGCC
AGATCTTTCACGTGTGCCTGCCGGTTACCTACGCCGATGGCAGGGAAAAT
ACTTTCCGCTGGAGCTTCATCTGCCCCGAGGAGACCATCTTCAGTCAGGA
ATCGTTCACCTGCATGCGTCGCGAGGACATGACCATCGAGTGCGAGGATA
GCTCCAGATACTACGAACTGAATGGCAACTTTGGTGGTCCTGCGGAGGAG
GAAAGTAAGCCCACTCCCGTGGAGAGCGAGGAGCCGGAGAAGGAGGAGTC
AGAGCCCGAACCCGAACCCGTTGAGTCAGAGCCAGAGATTCCGGCAGAAC
CAGAAGTCCAGACAGCCAAGCCGATGAAGCCAGTCAAGGCCCAAAAGCCC
AAACCCAACCGAAGGAAGCCCCAGCCCCAGAGAAAGGTTCCAGCTGTAGT
TACTGCTGCACCTGAGGTAGAAGCTATTCCCGAGCCAAGTGCCCCCGTCG
AAATGGAGCCGAAGCCCTTGAAGCCACAGAGGTTCACCAGCAGACCCCAC
CAGGAAAGACCCCAAGTGAAGAGGCCTGCAATTGCTGCTCCACCTATGCG
AAATGAGCTATTCAATGGAATCCGCAAGCGTCCAGCCATCTTCAATAAGC
CACCAACTACAGTGAAACCAGTTGAGGAGGTGGTGGAAAATGAACCCGGC
GTCACAGAGGCAGTTGTTCACTTAGTGAGCCCCAACCCACACTGAAACTG
CAGACCTTGTTCGCGGACGGAAGTATTCCTGTGAGTCAGAGCCAGAAGTC
AGCTTCCGAACAGCTGTGACTTCGTCAGCGAGCCGTGTTGAGATTGGTAC
CCTCGAGGTGGAATTGATCAGATCCAGAGTCCAGGCAATGGAGCATCGAA
AGATCCGCGTC
UFO08932.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12009-RA | 3274 | CG12009-RA | 259..1389 | 9..1118 | 5095 | 97.8 | Plus |
| CG12009-RB | 3235 | CG12009-RB | 292..1350 | 81..1118 | 4735 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3296372..3296994 | 396..1017 | 3005 | 99.2 | Plus |
| 3L | 28110227 | 3L | 3295995..3296316 | 78..399 | 1610 | 100 | Plus |
| 3L | 28110227 | 3L | 3295006..3295077 | 9..80 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:56:20 has no hits.
UFO08932.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:41 Download gff for
UFO08932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12009-RA | 249..1394 | 3..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:16 Download gff for
UFO08932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12009-RA | 253..1398 | 3..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:52 Download gff for
UFO08932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12009-RA | 253..1398 | 3..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:52 Download gff for
UFO08932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3295000..3295077 | 3..80 | 96 | -> | Plus |
| 3L | 3295998..3296315 | 81..398 | 100 | -> | Plus |
| 3L | 3296375..3297124 | 399..1124 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:16 Download gff for
UFO08932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3295998..3296315 | 81..398 | 100 | -> | Plus |
| arm_3L | 3295000..3295077 | 3..80 | 96 | -> | Plus |
| arm_3L | 3296375..3297124 | 399..1124 | 96 | | Plus |
