UFO08934.5prime Sequence
1109 bp (1000 high quality bases) assembled on 2011-08-10
> UFO08934.5prime
CAGTCGACATGAAAATAAGAAATGACACGAAATGCTCGGTGTTCCGCGGG
CTCGTGCTCTGTCTGTGCCTGAACCTGAGCTATGCGAACGTGGTCCGCTT
CCCACGCGAGTTGGACCGCTACGGGTCGGCGTACCTGGTTCCGTACGTGG
TGTTGCTGTTTCTAGTCGGCCTGCCCATGGTTCTGCTGGAGATCTCGGTG
GGCCAGTTTCTGGGCCAGGGGGCGGCGCACACCTGGCGCGCCTCGCCCAT
TTTCAAAGGAGCCTGCATGATCAGTCGCTTTGCCTCCTGGCTTTCGGCCA
TTTGGGTGTCCTTGCAGGCCGTGCTGGCACTGGCCTACATCGGGATGTTC
GCCTCCAATGACCTGCCATTCCGGGAGTGCGCTGGACCCGTGAAGCTGCG
ATTGAGTGGATACCTCCTGACGGGAACCAGTGGACAAGAGTGTTTGCAGC
TGACCTTTCTAACTCCATTCTGGCGGAATCCTCTGTACTTTGGTCTTCTG
GCAGCGGGACTTATAGGCCTTTGGATAGTTGTAATGCTGTGCACACACAA
TGCCAAAATCCTGCGCCGCAGTATATTCGTCTTCGGACTAGTTGGTCTAG
TCCTGCTTTGCACACTCACTGGTTGGGAGGTGCGAAACTCCTTCAGTCGT
CACTACTTCCCGGAGCTGTGGGGATTCGACTCTAATTTGCTGGCCGAAAG
CAACATCTGGTTCAATGCCCTGATGCAGTTCTCTTCTCAGTGAATTGTGG
CTTTGGAGCTCTGCCCATGATCACGGGCAAGTTCTTGTACAAAGGCGATG
CTGTGAGAACCTCGGTGGTTTATCTCTGCTTCAACCTGCTCATAAACGCC
ATTGCCGTAACCCTGTTCATGGTCCAGTTTGATTTGTCGTCAAATGGCTT
TCAGATATGGAGGACCTAAAGCCCCTAACCGCCATCTACGATCGGTTATG
AATTGATCCCGGGAGGGCGACAGTCACCTACTACACATCTGGTTCCATCG
CTTATTTAACCCCTAATATTCTCTCGCCCAGTACCCCAAACAGGTGCGTG
TAACCCTCCCACGTCTTGTGCCCAACGCCCCACATGTGGATCTGCTGGAT
TGATGTGGA
UFO08934.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blot-RA | 2927 | CG3897-RA | 95..1199 | 9..1102 | 4935 | 97.2 | Plus |
| blot-RE | 3089 | CG3897-RE | 275..1361 | 27..1102 | 4845 | 97.2 | Plus |
| blot-RC | 3057 | CG3897-RC | 243..1329 | 27..1102 | 4845 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17397850..17398331 | 1018..541 | 2105 | 97.7 | Minus |
| 3L | 28110227 | 3L | 17401610..17401842 | 259..27 | 1165 | 100 | Minus |
| 3L | 28110227 | 3L | 17398587..17398734 | 404..257 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 17398395..17398532 | 541..404 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:55:44 has no hits.
UFO08934.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:36 Download gff for
UFO08934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blot-RA | 88..1095 | 1..1005 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:01 Download gff for
UFO08934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blot-RA | 88..1095 | 1..1005 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:36 Download gff for
UFO08934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blot-RA | 88..1095 | 1..1005 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:36 Download gff for
UFO08934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17401611..17401842 | 27..258 | 100 | <- | Minus |
| 3L | 17397863..17398330 | 542..1005 | 98 | <- | Minus |
| 3L | 17398395..17398531 | 405..541 | 100 | <- | Minus |
| 3L | 17398587..17398732 | 259..404 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:01 Download gff for
UFO08934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17394711..17394942 | 27..258 | 100 | <- | Minus |
| arm_3L | 17390963..17391430 | 542..1005 | 98 | <- | Minus |
| arm_3L | 17391495..17391631 | 405..541 | 100 | <- | Minus |
| arm_3L | 17391687..17391832 | 259..404 | 100 | <- | Minus |
