UFO08935.5prime Sequence
819 bp (819 high quality bases) assembled on 2011-08-10
> UFO08935.5prime
CAGTCGACATGTTCCTCAGTGGCTATTGGTTGCAGGTGGTGCTCTCCTGG
GCGGTGGTGGCCTTTGCCACGGCCACGGTTGTGGTGGCGGTGCAGAAGGC
TCAGCTGGAAAGGGACCTCCGCGATGTGCAGGACAAGATCGATGTGTTCG
AGGAGTGGAGCGGAGAGAGCCGCACTCGCATGAAGCGTGAAGATACGACG
GATTACCGCCTGCCCACGAATCTGGTGCCCACGCACTACGAGCTCTACTG
GCATCCGGATCTGGAGACAGGAAACTTCACCGGACAACAGAGGATCAGCA
TCAAGGTGGTGGAGGCCACTAATCAGATTATTCTGCACTCATATCTCCTG
GATATCACAAGTGTCTATGTGCTGAATAGAGAGGTGGAAAAGTTTGAGCT
TGAGGAGGAACGTCAGTTCCTGATCATAACTTTGACGGAAGAGCTGGCGG
TGGACGCCAGCATTACTCTCGGAATCATTTTTGGTGGACAGATGAAGGAT
AAGCTTGTGGGTCTCTACAGCAGTACATATCTAAACGAGGCAGGAGCTAC
CAGAACCATTTCTACGACGAAAATTCGAACCCACTTACGCGCGTCAGGCC
TTCCCATGCTTCGATGAACCAGCCATGAAGGCCACATTCGCCATTACAGT
GGTTCATCCATCGGGATCCTACCACGCCGTTTCCAACATGCAACAAACGG
AATCCAATTATCTGGGTGACTATACTGAGGCCATCTTCGAGACGAGTGTG
TCGATGAGCACCTACCTGGTATGCATCATTGTGTCCGACTTCGCTTCCCA
ATCGACCACGGTGAAGGCC
UFO08935.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8774-RA | 2966 | CG8774-RA | 35..844 | 9..819 | 4030 | 99.9 | Plus |
| CG8774-RB | 3089 | CG8774-RB | 184..967 | 35..819 | 3900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13299260..13299616 | 197..553 | 1785 | 100 | Plus |
| 3R | 32079331 | 3R | 13299014..13299202 | 9..197 | 945 | 100 | Plus |
| 3R | 32079331 | 3R | 13299748..13299896 | 551..700 | 700 | 99.3 | Plus |
| 3R | 32079331 | 3R | 13299949..13300069 | 699..819 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:55:49 has no hits.
UFO08935.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:37 Download gff for
UFO08935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8774-RA | 34..843 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:03 Download gff for
UFO08935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8774-RA | 35..844 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:39 Download gff for
UFO08935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8774-RA | 35..844 | 9..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:39 Download gff for
UFO08935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13299751..13299895 | 554..699 | 99 | -> | Plus |
| 3R | 13299950..13300069 | 700..819 | 100 | | Plus |
| 3R | 13299014..13299202 | 9..197 | 100 | -> | Plus |
| 3R | 13299261..13299616 | 198..553 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:03 Download gff for
UFO08935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9124736..9124924 | 9..197 | 100 | -> | Plus |
| arm_3R | 9124983..9125338 | 198..553 | 100 | -> | Plus |
| arm_3R | 9125473..9125617 | 554..699 | 99 | -> | Plus |
| arm_3R | 9125672..9125791 | 700..819 | 100 | | Plus |
