UFO08936.5prime Sequence
1081 bp (1007 high quality bases) assembled on 2011-08-10
> UFO08936.5prime
CAGTCGACATGCTAAAGTCGATCAGCGGAGGCGTTGGCGTGGCATCCACG
GAACGAGGTGGTGGCGGAGGAGGCTGCGGAGGAGGTGGAGCAGGAGGAAG
CGCCTCTGGGAGCAGGAGTACCAGCGGAAGCGGGCGCGCTAGCTGTGGGC
TGGGCTCCAGTTCGATTTCCAGTGGATTGAGTGCGGTGTGCGGATTTGTG
ACCGGAGCTAGTGGCGGAGGTGGATTTGAGCGGGATCGCGACAGGGACAG
AGGATTAGCCAACATCAGCGGTGGCAGCACTCCTGCCGGGATCCTTTATT
GCCCCGCTTGTATGGCAGCTGCCAATCAGCAGAGTCCCAGCCAGAATTCG
AGTCCGCACCACGAGAGTTTCTTCTTGCGCAGCTCCTTCAAGTCGAGCAA
ACGGAACAAGGCCAGGAAAAGCGCCTCCACCGCCGGCTGCTTAGACGCCC
AGCACATACGGGCGAATCTCCGAATGTCCATGTCCAGTTCAATGAGAAGC
TCTAGAGGGAATGGCGGTGGTGGAGCGGCCTCCTCCTCGCATCCTCCGGG
CAGCAGCTGCAGCAGCGGACCAGGAGGATCGGGATGTAGTATGGCATATG
ACGCGGCAAGCAATGCCAGCAGTGGAAGTGGCAGTGGAAGCGGAAAGGCC
ACTTCCCCGGGTAGCTACAGCTGCAATGCCCTGAACGTGGACTTCACCTC
CTACACGGCCACGCATCAGTGGACCAGGATGCTCGAATGCGCCGAGTTCG
TGGGGCGCCAAGCGAAGCAAGCACACAGTGGTGGCCTACAAGGATGCGAT
GTTTGTATTCGGAGGTGACAACGGCAAGAACATGCTAAACGACCTGATTC
GCTTCGGCGTTAAGGACAAGTCATGGGGCCGCGCATGTGCAACAGGAACT
CCGCCTGCTCCGCGAATACCACCACTCGGCGGTGGTGGCCCGGCAGCTCT
ATGTTCATCTTTGGGGGTTACACCGGCGACCATTCCCTCCACTCAAACTT
GACCAACAGAACGATCTGTTCGAAATACAGTCCGAACGCCCATGGTGGTG
GTGATATGGAATGTCTCCGGGACACCACTAC
UFO08936.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3711-RD | 4056 | CG3711-RD | 136..1149 | 9..1024 | 4925 | 99.3 | Plus |
| CG3711-RE | 4335 | CG3711-RE | 136..1149 | 9..1024 | 4925 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 926702..927447 | 754..9 | 3730 | 100 | Minus |
| X | 23542271 | X | 926372..926633 | 1024..762 | 1065 | 96.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:55:53 has no hits.
UFO08936.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:37 Download gff for
UFO08936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3711-RB | 117..1148 | 9..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:05 Download gff for
UFO08936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3711-RE | 136..1167 | 9..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:41 Download gff for
UFO08936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3711-RE | 136..1167 | 9..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:41 Download gff for
UFO08936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 926354..926633 | 762..1040 | 96 | <- | Minus |
| X | 926696..927447 | 9..761 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:05 Download gff for
UFO08936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 820387..820666 | 762..1040 | 96 | <- | Minus |
| arm_X | 820729..821480 | 9..761 | 99 | | Minus |
