UFO08938.5prime Sequence
1135 bp (1041 high quality bases) assembled on 2011-08-10
> UFO08938.5prime
CAGTCGACATGGGCAATGAAGGCAGCAAACTAAAAGGAATACTTGTTGAG
GAAAATGCGGTGGAGACTAATCAATTTTGGACAGTTTATAACGCTAAGAC
GCCAGAGACAACCAACGATGAACGTTGCAGCCAGATGCTCTCCGTATTCG
AAGGAAAAGTCTTTGTCAAGGCACATGTATGGTCAAATGGAGTGGGCCCG
ATTGAAAGAGCAATAAAAAACCTGATGGTCTACCGCCACCCGTACATCTT
AAAATATATAGCTACCTGGGAGAAGTCGGGACGGAAGTATCTTGCTACAG
AGAGAGTCAGACCTCTAGATGAGGTGCTGGCCCAGCAGACTGACATTGAA
GTCTGCCTAGGGCTGCGAACCATTTTATGCGCTCTAATATTTTTGGTTGA
GAAGGCCCTGGCTCGGCACTTAAATATTAACACGCAGTCTATTTACGTAA
CGGAGAGTGGAAGCTGGCGCCTCGCTGGCTTCGAGTACGTTTGGAGGGCC
ACGGATGTCAACAAACAACTGCTCGACTTGGCACATTCTTTTATAGACTT
GACTATTCACGGAGAGAACTTCGAACAATTTTTCTTCTCCATTTTGTGCG
AGAAAGTGCTAAGCAGGAAAGGAACTGATAGTTGTATTACTGATAGCACT
CCACACGTTCATGAGTTCCGTGAGTATTGCAGCACACACCTAAAGCATCA
AAATACAAAGCTAAGGCCAAGACTTTCTGCTATCTTGCTACATCCATACT
TCAACCATGAATTCGTGCTTATACATTCCTTTCTCTTTGAGTTGCCACTG
AAGTCAGTGCACGAGCGCCACAAATTCTTTAGAAGTTTGATTGATCGATT
GCGATATTTCGACGAGGAAGTAGTGGCTTCGCAGCTGGCATGTGACTTAC
TCTCTAGAATGGTTCTGCTGGATCCTGCTGCACAAGAATTTGTGACTCCG
CATATACTCCGTAAAAAAGTTACTGATAAAGCACCGGCATCGCTATTTCT
CGGCAAATCTACGTAACAATACTTAATGCCACACATACTTCAGAATGTTC
CGCTTGCGTGATGCACCAGATTCGAATAATACTTCTTGAACTATTTATAT
GGACCAATTCGTCTTTAGGCCGAAGAAGCAACTAG
UFO08938.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1344-RB | 3051 | CG1344-RB | 32..1154 | 9..1135 | 5265 | 98.3 | Plus |
| CG1344-RA | 2202 | CG1344-RA | 32..1154 | 9..1135 | 5265 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5653969..5654837 | 219..1089 | 4085 | 99 | Plus |
| 2R | 25286936 | 2R | 5653707..5653916 | 9..218 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:56:42 has no hits.
UFO08938.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:45 Download gff for
UFO08938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1344-RA | 69..1171 | 9..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:27 Download gff for
UFO08938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1344-RA | 32..1134 | 9..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:00 Download gff for
UFO08938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1344-RA | 32..1134 | 9..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:00 Download gff for
UFO08938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5653707..5653916 | 9..218 | 100 | -> | Plus |
| 2R | 5653969..5654835 | 219..1087 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:27 Download gff for
UFO08938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1541212..1541421 | 9..218 | 100 | -> | Plus |
| arm_2R | 1541474..1542340 | 219..1087 | 98 | -> | Plus |
