UFO08939.5prime Sequence
292 bp (292 high quality bases) assembled on 2011-08-10
> UFO08939.5prime
CAGTCGACATGACGATGGCCGCCTGTTATGCCAACTACGACATGTCGTCC
CTGTCGCACGGCATGTCGGCCCTGTCCGCCCTGCAGCAGCAACAGCAGCA
GCAACAGCAGCAGCACAGCCAGACGCAGCAGCAGCATCATCACCAGCAGC
AGCAGCAACACATGTACCACGCCGCCGTGGCTGCCCACCAGCAGCAGTTG
CTGCAACAGCAGCAGCAGCAGCAACACCACCGCCATCACCACCAGCCCGC
CAACACCAGCAGCAGCAGCAACTCGCGCCACAGCCATGCGGC
UFO08939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
corto-RD | 3352 | CG2530-RD | 1048..1331 | 9..292 | 1420 | 100 | Plus |
corto-RC | 9294 | CG2530-RC | 1048..1331 | 9..292 | 1420 | 100 | Plus |
corto-RB | 3537 | CG2530-RB | 688..971 | 9..292 | 1420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5085742..5086025 | 292..9 | 1420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:56:47 has no hits.
UFO08939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:45 Download gff for
UFO08939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
corto-RA | 657..945 | 1..292 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:28 Download gff for
UFO08939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
corto-RB | 998..1286 | 1..292 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:02 Download gff for
UFO08939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
corto-RB | 683..971 | 1..292 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:02 Download gff for
UFO08939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5085742..5086030 | 1..292 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:28 Download gff for
UFO08939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 911464..911752 | 1..292 | 98 | | Minus |