Clone UFO08939 Report

Search the DGRC for UFO08939

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:89
Well:39
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptcorto-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO08939.5prime Sequence

292 bp (292 high quality bases) assembled on 2011-08-10

> UFO08939.5prime
CAGTCGACATGACGATGGCCGCCTGTTATGCCAACTACGACATGTCGTCC
CTGTCGCACGGCATGTCGGCCCTGTCCGCCCTGCAGCAGCAACAGCAGCA
GCAACAGCAGCAGCACAGCCAGACGCAGCAGCAGCATCATCACCAGCAGC
AGCAGCAACACATGTACCACGCCGCCGTGGCTGCCCACCAGCAGCAGTTG
CTGCAACAGCAGCAGCAGCAGCAACACCACCGCCATCACCACCAGCCCGC
CAACACCAGCAGCAGCAGCAACTCGCGCCACAGCCATGCGGC

UFO08939.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
corto-RD 3352 CG2530-RD 1048..1331 9..292 1420 100 Plus
corto-RC 9294 CG2530-RC 1048..1331 9..292 1420 100 Plus
corto-RB 3537 CG2530-RB 688..971 9..292 1420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5085742..5086025 292..9 1420 100 Minus
Blast to na_te.dros performed on 2014-11-26 23:56:47 has no hits.

UFO08939.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:45 Download gff for UFO08939.5prime
Subject Subject Range Query Range Percent Splice Strand
corto-RA 657..945 1..292 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:28 Download gff for UFO08939.5prime
Subject Subject Range Query Range Percent Splice Strand
corto-RB 998..1286 1..292 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:02 Download gff for UFO08939.5prime
Subject Subject Range Query Range Percent Splice Strand
corto-RB 683..971 1..292 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:02 Download gff for UFO08939.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5085742..5086030 1..292 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:28 Download gff for UFO08939.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 911464..911752 1..292 98   Minus