UFO08940.5prime Sequence
1134 bp (1032 high quality bases) assembled on 2011-08-10
> UFO08940.5prime
CAGTCGACATGACGCTGGACGTGGGCGGCGTCGCCAGGGGACTGCTCACC
TGGGACAAACAGGAGCACCTGGTCAAGCTGGCCATTCTCATCCTGGCAGC
GGTTTTATCATTTGCCACACGCTTGTTCTCTGTGCTGCGATTCGAAAGCG
TAATCCATGAGTTCGATCCGTACTTCAACTACCGCACCACGCGGTTTCTG
GCGGAGCAGGGCTTTTACAAGTTCCACAACTGGTTCGATGACCGCGCCTG
GTATCCCCTGGGCCGCATCATCGGCGGCACCATCTATCCCGGGCTGATGC
TCACCTCGGCGGCCCTGTACCGCCTGATGTGGCTGCTCAATGTGACCATC
GACATACGGAACGTGTGCGTCTTCCTGGCGCCCTTCTTCTCCTCGCTGAC
CACGCTGGTGACCTACGCCCTCACAAAGGAGATACACAGCACTGGAGCTG
GACTGGTGGCCGCCGCTTTGATATCCATCGTTCCCGGGTATATCTCTCGA
TCCGTGGCGGGATCGTACGACAATGAAGGCATCGCCATTTTCTGCATGCT
CTTCACCTACTATTTGTGGATCAAGGCGGTAAAGACGGGCACGATCTTTT
GGTCGGCTATGTCGGCATTGGCCTACTTCTATATGGTCTCCTCGTGGGGT
GGCTATGTCTTCCTGATTAACCTAATCCCGCTGCACGTGCTGGCGCTGAT
GATCACCGGACGTTTCTCGCACAGGATCTACATAGCATACAGCACGCTAT
ACTGCGTCGGCACCATTCTGTCGATGCAGATCTCGTTTGTGGGATTCCAA
CCCATCCAGAGCTCCGAACACATGCTGGCACTGGGAACCTTTGGCCTGTG
CCAGATTCACGCTTTCGTCGACTATCTGCGCTCGCGCATTCCCAAGATCA
CTTCGATCTGCTCTTCAAGACGTTGGTTTCCAGTGTTTTGACTGTGTGTT
CGTCGTGGGTACCCTGCTCACGCTTACCGGGAAAGTCTCCCCTGGACCGG
CAGATTTTACTCCGCTACTAGATTCATTCTTATGCAAGAATCACATTTCC
AATTCATCCGCCTCCGGTATTCGAGCATCAGCCTAACATCTGGTCGTCTT
CTATTTGAATCTGCCGAATCCTGGCTCTCCTCTT
UFO08940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1518-RC | 2755 | CG1518-RC | 228..1351 | 9..1134 | 5160 | 98 | Plus |
| CG1518-RA | 2676 | CG1518-RA | 228..1351 | 9..1134 | 5160 | 98 | Plus |
| OstStt3-RA | 2703 | CG7748-RA | 219..365 | 153..299 | 240 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21052409..21052799 | 828..438 | 1955 | 100 | Minus |
| X | 23542271 | X | 21052898..21053226 | 437..109 | 1645 | 100 | Minus |
| X | 23542271 | X | 21051982..21052208 | 1047..823 | 835 | 95.2 | Minus |
| X | 23542271 | X | 21053611..21053710 | 108..9 | 500 | 100 | Minus |
| 3R | 32079331 | 3R | 25069273..25069419 | 299..153 | 225 | 76.9 | Minus |
| 3R | 32079331 | 3R | 25068884..25069097 | 688..475 | 200 | 72.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:56:51 has no hits.
UFO08940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:46 Download gff for
UFO08940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1518-RA | 401..1507 | 2..1110 | 97 | <- | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:31 Download gff for
UFO08940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1518-RA | 222..1328 | 2..1110 | 97 | <- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:05 Download gff for
UFO08940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1518-RA | 222..1328 | 2..1110 | 97 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:05 Download gff for
UFO08940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21051918..21052203 | 828..1114 | 93 | <- | Minus |
| X | 21052410..21052799 | 438..827 | 100 | <- | Minus |
| X | 21052898..21053226 | 109..437 | 100 | <- | Minus |
| X | 21053611..21053716 | 2..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:31 Download gff for
UFO08940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20922945..20923230 | 828..1114 | 93 | <- | Minus |
| arm_X | 20923437..20923826 | 438..827 | 100 | <- | Minus |
| arm_X | 20923925..20924253 | 109..437 | 100 | <- | Minus |
| arm_X | 20924638..20924743 | 2..108 | 96 | | Minus |
