UFO08943.5prime Sequence
1059 bp (976 high quality bases) assembled on 2011-08-10
> UFO08943.5prime
CAGTCGACATGGTAATGCATGCTAGAAAACCGCAGCGTATGAACGATGGG
TACTTTGAGAAGCATACCAGTCACACATCATACCAGAGCTCAAAGTACAG
CAGTTCAAAGCGCGACTACGAACGCGATCGTTCCTCCAATTATCGCGATC
GTGACCTGTCGCCAGGCGCTGGCGGTGGAGGAGGCGGCGGATCCGCTGGA
GGAGGTGGCGGCGGTAGCGGAAATGGCGGCGGACCATTGAACAATGGCAA
CAGCTACCGCTCCCAGTCGCCGGACATTGATTCGCCGTCGTCCCGTTCGC
ACGATCTGCGCGACCGCAGCGATCATCGGGGCGGAGGTGGCGGCAATGGG
CGTGGCGGCAGTGGCGAGCGGTACAGCTTTATGCAGAAGATGCGAGATCG
AGATCGGGATGTCTACAAGAAGGATAAATATTCAGATAAACGTGATCGGC
GTGGCAACGATCGCGATTCGGAGTCGTCGTATCGCACCAACCATGATAGG
GATCGTCGTGGCGGAGGAGGCAGCGGAGGCGGCAGCGGCAAGCTCTGCTC
CTCGCGGGAGAACGACAAACGATCCGGGTCCGACGATCGCGATCGAGATC
GGGATCGAGATCTGCGCGACTTGCGCGACAAGCGGGACCGCGGTTCCGAT
CGCGACAGGGACATGTACAAGAAGGACAAGTACGCAGACAAACGAGAGCG
CAGCGATCGCGGCGAACGGACGGCGCGTTATGGCGACTGGAGCGAGCATG
TCAGCTCATCAGGCAAAATGTATTATTACAACTGCAAGACGGAAATCTCT
CAGTGGGAGAAGCCAAAAGGAATGGGTGGACAGAGAAAGAAATTTGCCGC
GCGATCAGCATCGTGAGAAGGATTATCGTGACAAGGATCGCGATCGCGAC
CGCGATGATCGTTTCTCAGATCACATACAAACATTTCAATTCCTCGCGGG
GACAATTTCACGACTGAAATGGAATTACGAACAACGATGGCGGTCGCCCA
GTCTTCGAAGGCGTTTGAAGGTCGAACCACGACAATGCTGGACCATGGGA
TATAACGCG
UFO08943.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8949-RG | 4532 | CG8949-RG | 693..1725 | 9..1040 | 4870 | 98.6 | Plus |
| CG8949-RD | 4773 | CG8949-RD | 633..1665 | 9..1040 | 4870 | 98.6 | Plus |
| CG8949-RC | 4466 | CG8949-RC | 633..1665 | 9..1040 | 4870 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17073263..17073614 | 435..84 | 1760 | 100 | Minus |
| X | 23542271 | X | 17072946..17073199 | 687..434 | 1270 | 100 | Minus |
| X | 23542271 | X | 17072462..17072541 | 917..838 | 400 | 100 | Minus |
| X | 23542271 | X | 17072789..17072866 | 763..686 | 390 | 100 | Minus |
| X | 23542271 | X | 17072649..17072728 | 839..759 | 355 | 98.8 | Minus |
| X | 23542271 | X | 17076922..17076965 | 52..9 | 220 | 100 | Minus |
| X | 23542271 | X | 17072297..17072388 | 1017..924 | 215 | 91.6 | Minus |
| X | 23542271 | X | 17075953..17075990 | 86..49 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:56:57 has no hits.
UFO08943.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:46 Download gff for
UFO08943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8949-RD | 688..1740 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:33 Download gff for
UFO08943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8949-RC | 602..1654 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:08 Download gff for
UFO08943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8949-RC | 628..1680 | 1..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:08 Download gff for
UFO08943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17072790..17072864 | 688..762 | 100 | <- | Minus |
| X | 17072946..17073197 | 436..687 | 100 | <- | Minus |
| X | 17072454..17072539 | 840..923 | 97 | <- | Minus |
| X | 17072649..17072724 | 763..839 | 98 | <- | Minus |
| X | 17073263..17073611 | 87..435 | 100 | <- | Minus |
| X | 17075953..17075989 | 50..86 | 100 | <- | Minus |
| X | 17076925..17076970 | 1..49 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:33 Download gff for
UFO08943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16966487..16966572 | 840..923 | 97 | <- | Minus |
| arm_X | 16966682..16966757 | 763..839 | 98 | <- | Minus |
| arm_X | 16966823..16966897 | 688..762 | 100 | <- | Minus |
| arm_X | 16966979..16967230 | 436..687 | 100 | <- | Minus |
| arm_X | 16967296..16967644 | 87..435 | 100 | <- | Minus |
| arm_X | 16969986..16970022 | 50..86 | 100 | <- | Minus |
| arm_X | 16970958..16971003 | 1..49 | 91 | | Minus |
