UFO08945.5prime Sequence
1123 bp (992 high quality bases) assembled on 2011-08-10
> UFO08945.5prime
CAGTCGACATGAGGCTCACGTTGGCCTGGCTCAGCCTCTGCCTGGCGATT
TATTGCGGCGGTGGCCATGGCCATGGCAATGTGGTCCTATCTTTGCCACC
ATCGCTTATCGCCACGGCCACGAAGGCGGCCTTGAGCCACCAACGGCAGC
AGAAGCAGCAGCAGCAGCATCAGAAAAAGGATGCACGCGTCCTGTTTGAC
AGCCCCGCCGATGCACTGCGCGATATGATGCACAACGGCAATGGCAATGG
CAATGGACCCATGGATTCTGGAAAATTTAGCCTGTCCGATGTGGAGCAAC
CAGCAGCGCAGCGCTCTGAGGATTTTAATCGAAACGCATATGATTTAGGG
GCCAGGCAATCAGCGCCGCAGGAAATTGCAATGGGAATGGAACTGGGCAT
GGGTCTGGGTCTGGGGCCCAACAACTATCGCACCACGCCCCCTCATCGGT
ATTGGGGCCAGCGTTGTCAGGGTCGATCCGGCGGATCTGGAACCAGCAAG
TGTCCGCAGGAATACTATCGCACCATGCTGGCGGCCAGGAACAAAGAGGC
GCTGTCCCGCCTCCACATGCAGCTGAGTTCGATGCAGGATTCCGATTCTG
GGGCCAGCTCCTCCTCGGATTCCGAGGAGGAACATGTCGACGATGAGGAG
CAGAGCAACAACGAGGTCTTCATGCTGCTAACTGGCGAACAGGATTTGAT
GAAGTTTCTGCACTGGGCCATGCAGGTCCTGTATCCCATTGAACGTCCTT
TGGGCAATCTGAGCGATGGAGCTGCCGAGAACTACTATCCAGGAATGTTT
CTCTGGAAGAAACTAAATCTTTCGGGCCATCTGGAACCCCCACTTATTGT
GGATGAGCCCCAGTATGTGCTGGTACGAAGGGAAAGCTTTTCGATGGCTA
TCAATTTGGAGACATGAGCAAAGAGAACGATCCCTTCATACCGCCTCGAG
GTCGCAAGCACAGCGGATCGCTGGATCTGGACGCCCTGATGAACCGTACG
ACCTTGTTGCCCAATCGCGGCAAGCCGGACAGGTCAAGGATCTGGTCAGT
ATGACGACTGTTCTATCCGCATCGCGGCAAAGCATCTAACCTCTTCCAAG
TGGACGATCCTCTGCCATCGCGA
UFO08945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| natalisin-RC | 1996 | CG34388-RC | 199..1311 | 8..1110 | 5230 | 98.5 | Plus |
| natalisin-RD | 1989 | CG34388-RD | 199..1314 | 8..1110 | 5190 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14418791..14419322 | 8..539 | 2660 | 100 | Plus |
| 3R | 32079331 | 3R | 14420527..14420903 | 536..911 | 1835 | 99.7 | Plus |
| 3R | 32079331 | 3R | 14420971..14421180 | 910..1110 | 565 | 92.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:57:06 has no hits.
UFO08945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:48 Download gff for
UFO08945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34388-RC | 192..1313 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:37 Download gff for
UFO08945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34388-RC | 192..1313 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:13 Download gff for
UFO08945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| natalisin-RC | 192..1313 | 1..1113 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:13 Download gff for
UFO08945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14418784..14419321 | 1..538 | 99 | -> | Plus |
| 3R | 14420530..14420903 | 539..911 | 99 | -> | Plus |
| 3R | 14420973..14421182 | 912..1113 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:37 Download gff for
UFO08945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10244506..10245043 | 1..538 | 99 | -> | Plus |
| arm_3R | 10246252..10246625 | 539..911 | 99 | -> | Plus |
| arm_3R | 10246695..10246904 | 912..1113 | 92 | | Plus |
