UFO08947.5prime Sequence
1108 bp (986 high quality bases) assembled on 2011-08-10
> UFO08947.5prime
CAGTCGACATGGAGAAGAAGGTCTATCAGGACACAACGCGACCGCTGCCC
AGGGTCTCCCGTGCACGGTACTATAACAAGCACGACAAGAGCGATCTGGG
CGACGACTTTGTGGCGCCCGACGCGGGATGGGCGTGGATCGTTTGCGTCG
CCGCTGGCGTTTCAAATCTCTCCATTTACCCCTGCCTGCAACAGTTTGGC
TTTCTATTCAGGGAGCGCCTGTCCGATCTGGGCATGTCCAGTTCCCAGAT
TACAGCCATCATTAACGCAAATCCGGCCGTATCGGCCTGCACGGGTCTGC
TCAATGGACCGATGTTCCGGAGGTTCACCTTTCGCCAGGTGGCCATGGCC
GGTTCTCTGCTAATCTCCGGGAGTCTCATACTAACCGCCTTCTGTGAAAC
CTTTCTCAGCTACATGGTGGCCTACGCCCTGTTGTTTGGCTTTGGCATGG
GCATTAGTGTGTCGGCCTCCTCGCTGGCGATCAACACGTACTTCCAGAAG
AAGCGTCGTCGGGCGGCCGGGTTTTCGTGGACCATAACGGGTCTGGGACC
GATCTTTCTGCCGCATCTGGTCACCTTTTTGCTGACCATTTACGGGGTGC
AGGGGACCACGCTACTCTTCGCCGCCATCTCGCTGCACTCGTTCGTTTGC
GCCCTGATCTATCAGCCGGTTCGGTACCATGTGAAGCCACCGGTGGAGCA
GCTGGCGGATCAGGAGCAGCAGGCGGAGGCGTTGTGTGCCCACTGCTCGT
GGCAGCAGAAACGCGAGCCGGGCGGCATATTCTCCAGTCAGTATCTATGC
CAGGACGACGATGCCCAGCGACCGGGCTACGAGATCTGTGAGCCCGGCAC
ACCGATGCTCTCGCGCGCCAACGATGGCTGGTATGGATCCCGGCTATCGC
TGACCTCGGGCCGCCTTCGCTTTCGCACCATCTCGAGCTCCAAGGATTCT
GGAGCAGAACGCAGCGACCTGCATTGTTCTCTTTATCGAGGGGCAGAACC
ACCAAAGCGAGGAATCCCGCGCCCCAATACCTTTCTCAAGGGAGGCGGGT
GGGATCAACCTGGAGGGCAACTGTGTTGGCTAGGTTCTGGCCAGCGGGAG
AGAGACAC
UFO08947.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14196-RA | 2455 | CG14196-RA | 534..1623 | 8..1100 | 4940 | 97.4 | Plus |
| CG8051-RB | 2278 | CG8051-RB | 381..458 | 84..161 | 195 | 83.3 | Plus |
| CG8051-RA | 2559 | CG8051-RA | 662..739 | 84..161 | 195 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19237147..19237741 | 1035..438 | 2595 | 97.5 | Minus |
| X | 23542271 | X | 19237898..19238169 | 439..168 | 1360 | 100 | Minus |
| X | 23542271 | X | 19238309..19238468 | 167..8 | 800 | 100 | Minus |
| X | 23542271 | X | 19303643..19303720 | 161..84 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:56:29 has no hits.
UFO08947.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:43 Download gff for
UFO08947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14196-RA | 526..1535 | 1..1013 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:20 Download gff for
UFO08947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14196-RA | 526..1535 | 1..1013 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:54 Download gff for
UFO08947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14196-RA | 526..1535 | 1..1013 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:54 Download gff for
UFO08947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19238309..19238476 | 1..167 | 98 | | Minus |
| X | 19237170..19237740 | 439..1013 | 98 | <- | Minus |
| X | 19237899..19238169 | 168..438 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:20 Download gff for
UFO08947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19131203..19131773 | 439..1013 | 98 | <- | Minus |
| arm_X | 19131932..19132202 | 168..438 | 100 | <- | Minus |
| arm_X | 19132342..19132509 | 1..167 | 98 | | Minus |
