UFO08948.5prime Sequence
1111 bp (999 high quality bases) assembled on 2011-08-10
> UFO08948.5prime
CAGTCGACATGCCGCTCAATGCCCAGTTAAAGATTGCTCAATCAGTGAAC
AAAGTGACATACGCGAAAGTCAGTGACTCAAACTGTTGTGCTAAAAAGCA
ACAAAAATACTCTATTGCCGACTTTAGCCAGGCCAAAAGGCAGGCAGGCA
GCATGTGTGCCACGGGGAAAGGTAAGCACAGGCTCTGTAGCCTCAGTGCC
CTGCTCCTCGTCCTGGTCGCCCAAACAGTGCACGTGGAATACGCCCGGGC
GGATTATGAGAACACCTGGAATCTATATTACGAGCCGCCCTGCTGCACGG
GCTCATCTGCTGCCCATCATCTGCGCCACCACAAAGAACATGTGCAGGAC
TTCAGTTGCGGGCCGCTGCACTACAAGACTTTCTACATGGATGAGCGCAA
CAATGCGCTATATGTGGGCGCCATGGATCGCATATTTCGGCTCAATCTGC
GCAACATCAGCCAATCGATTTGTGAGCGCGATGTCCTCATCCTGGAGCCC
ACCGGATCGGATATCCTGAATTGTGTTTCCAAGGGTAAACGGGAGAAGGT
GGAATGCCGAAATCACATAAGGGTTATCCAGCCGATGAACTTCAATGGCC
AGAAGCTATATGTTTGCGGGACCAACGCCCACAATCCCAAGGATTACGTA
ATAAACGCAAACTTAACACATTTACCCAGATCCCAGTACGTGCCCGGCAT
TGGCCTGGGCATTGGCAAGTGTCCCTACGATCCTGCTGACAACTCAACCG
CCGTCTATGTGGAGAACGGAAATCCCTTCGGCCTGCCCGCCCTGTACGCC
GGCACAAATGCCGAGTTCACCAAAGCGGATTCCGTCATATTCCGCTCGGA
CCTGTACAACCTGACGAATGGACGCAAGGAGGCCAACTTCAGAGAACCGT
GAAGTACGACTCCAAGCTGCTGGACAGCCCAACTTCGTCGGCTCCTTTGA
GATTGGTGATTTGTGTACTTCTTCTTCCGCGAACATGCCGTTGAGTACAT
AATTGCGGAAAAGCGTCTACTTCCCGAAGTGCTCGGGTGGTGCCAAACGA
CCGCGGGGGAAATAATGATCAGCCGAATTGGCCACGTATCTGAGGCCGGA
TGAACTGCCGC
UFO08948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2b-RD | 4174 | CG33960-RD | 493..1602 | 9..1108 | 5135 | 98.4 | Plus |
| Sema-2b-RB | 4174 | CG33960-RB | 493..1602 | 9..1108 | 5135 | 98.4 | Plus |
| Sema-2b-RA | 3718 | CG33960-RA | 172..1278 | 9..1108 | 5080 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16399094..16399421 | 9..336 | 1640 | 100 | Plus |
| 2R | 25286936 | 2R | 16423451..16423588 | 657..794 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 16424037..16424171 | 794..927 | 625 | 99.3 | Plus |
| 2R | 25286936 | 2R | 16423012..16423125 | 544..657 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 16420279..16420369 | 335..425 | 455 | 100 | Plus |
| 2R | 25286936 | 2R | 16424295..16424433 | 926..1062 | 365 | 90.7 | Plus |
| 2R | 25286936 | 2R | 16422678..16422748 | 475..545 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 16421677..16421732 | 421..476 | 265 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:56:33 has no hits.
UFO08948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:43 Download gff for
UFO08948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33960-RA | 463..1578 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:22 Download gff for
UFO08948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2b-RB | 487..1605 | 1..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:57 Download gff for
UFO08948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2b-RB | 487..1605 | 1..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:57 Download gff for
UFO08948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16399088..16399421 | 1..336 | 99 | -> | Plus |
| 2R | 16420281..16420368 | 337..424 | 100 | -> | Plus |
| 2R | 16421681..16421732 | 425..476 | 100 | -> | Plus |
| 2R | 16422680..16422748 | 477..545 | 100 | -> | Plus |
| 2R | 16423014..16423124 | 546..656 | 100 | -> | Plus |
| 2R | 16423451..16423588 | 657..794 | 100 | -> | Plus |
| 2R | 16424038..16424174 | 795..927 | 97 | -> | Plus |
| 2R | 16424297..16424488 | 928..1111 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:22 Download gff for
UFO08948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12311543..12311679 | 795..927 | 97 | -> | Plus |
| arm_2R | 12286593..12286926 | 1..336 | 99 | -> | Plus |
| arm_2R | 12307786..12307873 | 337..424 | 100 | -> | Plus |
| arm_2R | 12309186..12309237 | 425..476 | 100 | -> | Plus |
| arm_2R | 12310185..12310253 | 477..545 | 100 | -> | Plus |
| arm_2R | 12310519..12310629 | 546..656 | 100 | -> | Plus |
| arm_2R | 12310956..12311093 | 657..794 | 100 | -> | Plus |
| arm_2R | 12311802..12311993 | 928..1111 | 91 | | Plus |
