UFO08949.5prime Sequence
1095 bp (1010 high quality bases) assembled on 2011-08-10
> UFO08949.5prime
CAGTCGACATGCTGAAATCGATAGTGACCGTCATCCGTTTGCACCTGGAG
GAGCTGTGGCTCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTC
GGCCATGATCGTCTTCAGCTGGTTCGTCGTCCCCTACAGCCGGTACACCA
ACATCAAGGTGATCCGGCGCAAATTGCCGCCCATCCGGAGCCACCTGCTC
GAGATTCCCGCCGTCGACCTGGCCAAGCTGATTCGCACCAGAAAGATTAA
AAGCGAAGAAGTCGTGGAAGCCTACATCGAACGATGTCGACAGGTAAATC
CTCTGATAAATGCCATCGTCCAGGATCGCTTCGAAGAGGCATTGGAGGAG
GCTCGGGAGATAGACAACGTGATAGCGATGGGCATTAACAGCGTGGAGTC
GATGGAGGAGCTGACCCCGTTGCTGGGCATTCCGGTGACCGTGAAGGAGA
GCATTGCCGTCAAGGGCATGACCAACCAGGCAGGTCGCGTCTTCAAGACG
CCGCAGATAGCCAAGTCGGATGCGCCGGTGGTGGAGCAGATCAAGCGCTC
CGGCGGCATCATCCTTCTGGTGTCCAACACACCGGAGCTTTGCCTGCTGT
GGGAGACGTACAACAACGTGACGGGTCAGACGAAGAATCCGTACGACCTG
AAGCGCACTCCGGGCGGCTCATCGGGCGGCGAGGCGGCCCTCCTGGCCAG
CGGTGCCTCCCTGCTGGGCCTCACCTCGGACATTGGCGGCTCTTCGCGCC
TACCGGCCATGTTCAGTGGCATTTGGGGCCACAAGCCCACACCGTATGCG
GTCTCCTTTAAAGGTCATCATCCGACGAGTGACTTTCCCAAGTGGGGAGA
TTTCTTCACCATCGCGCCGATGACCCGCTACGCCAAGGATCTGCCGCTGC
TGCTCAAGTGCATGAGCGATCCCACGGGTCCCAAGCTAACGCTGGACAGG
CCTATCAGTGGTGAATGGTATCCGGTTCTTCTCATGGACACGACGGCCAT
CCGGCATGATGCGCCGCTGAGCAGGGATCTGCATGCGCCATCACCCGCGT
GACACGATTCAATGCCAAGCGGGTGACTCCAAGATGACTGTCCCT
UFO08949.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5191-RB | 2630 | CG5191-RB | 435..1509 | 9..1076 | 5110 | 98.9 | Plus |
| CG5191-RF | 2405 | CG5191-RF | 211..1284 | 10..1076 | 5105 | 98.9 | Plus |
| CG5191-RE | 2687 | CG5191-RE | 493..1566 | 10..1076 | 5105 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20571087..20571851 | 291..1051 | 3500 | 99 | Plus |
| 3R | 32079331 | 3R | 20566426..20566609 | 62..245 | 920 | 100 | Plus |
| 3R | 32079331 | 3R | 20561357..20561412 | 10..65 | 280 | 100 | Plus |
| 3R | 32079331 | 3R | 20570600..20570651 | 244..295 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:57:26 has no hits.
UFO08949.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:51 Download gff for
UFO08949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5191-RB | 440..1529 | 9..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:45 Download gff for
UFO08949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5191-RB | 435..1524 | 9..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:20 Download gff for
UFO08949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5191-RB | 435..1524 | 9..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:20 Download gff for
UFO08949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20561357..20561411 | 10..64 | 100 | -> | Plus |
| 3R | 20566429..20566609 | 65..245 | 100 | -> | Plus |
| 3R | 20570602..20570649 | 246..293 | 100 | -> | Plus |
| 3R | 20571090..20571894 | 294..1087 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:45 Download gff for
UFO08949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16392151..16392331 | 65..245 | 100 | -> | Plus |
| arm_3R | 16396324..16396371 | 246..293 | 100 | -> | Plus |
| arm_3R | 16387079..16387133 | 10..64 | 100 | -> | Plus |
| arm_3R | 16396812..16397616 | 294..1087 | 98 | | Plus |
