UFO08950.5prime Sequence
1133 bp (1039 high quality bases) assembled on 2011-08-10
> UFO08950.5prime
CAGTCGACATGCCCGAAATGGATCCTTTTTCCGCTGACATTATGAGATTC
TTTAAACGAAGGCAGTTCAGAGAGTGTAGCAGCGATAAAGATTTGCTAAT
AAGTGAGTTCGATTCGCATCTACGACAATACAGGATCAAAATTGATGAGA
ACTCTGCTCAGCAGCATTTAAAGAAGTTCGGCAATGCAACACTCAAGTGC
GAATATCAGGTGATAGGTCGCAATAAAAAAGACTCGTTTCCGGATAATCA
TTTTAGTTTTTCCAAACTACAACCCTTGAGTCAATCCTTTCTGGTACCAA
AGACAATAGACTTTATATCCACCCAATGCCATGCCGTTCATGGAAACATC
GATTTGAAGCTTCTGCAGAAGGACGCCTTTCTATTTGTACAGGATCGCCT
GAATCACGAGCATAAGAACACGGAGCATCATCGTCCAGATTTGCAATCCA
AGCCGAATGTGATCATCCTGGGCATTGATTCCACATCCCGCATGAACCTG
AGACGCTCCATGCCCAAGGTTCACAAATTCTTGCAAAGACCAGGATGGTT
TGAGATGCAGGGTTACAATAAGGTCGGTGAAAATACGCTGCCCAATCTTT
TGGCCATACTCACTGGAAATGCCGAGGAAAACGCTCTATTCAATGGTCGA
TTTGGGCACAGCGGATTCATTGACAAACTAAAGTTCATTTGGCAGCTGTT
CAAGAAGAATGGCTACATGACAGCTTTTGGAGAAGACTGCGCTAAGATTA
ACACATTTAACTACCAGAAGCCAGGATTTAAGCAACAGCCAGTGGATTTT
TATCTTAGAAACTTTATTGTGGCTTTGGAAACTATTTTAAAGACGAGGCG
CGAGTTTGGAAATGTTTTCTGCCTGGGACGAAAGTTGGGTTTCCAATACG
TATTCGACTTTGCCAGGCAGTTTATGCAACGCTTTGAGATTCAGCACCCG
TATTTGGAATCTTCTGGAGCATAGTTTCACCCATGAGATTTCCTAGAGCC
ACTGCCTTGGATCACGTATTCTTGAATACTTACGTTGTACGATGACTTGC
TTTTCATCGGTCATAGTATGGGGTTGAATGACATGCTAAGAATGGGGTGA
ACTCGCAGCTTCAATCGGTTATCTGAAACGTCT
UFO08950.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9168-RA | 1952 | CG9168-RA | 139..1275 | 9..1125 | 5090 | 97.7 | Plus |
| CG10730-RC | 2000 | CG10730-RC | 565..721 | 449..605 | 200 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1411522..1412318 | 255..1045 | 3685 | 99.2 | Plus |
| 3L | 28110227 | 3L | 1411226..1411473 | 9..256 | 1240 | 100 | Plus |
| 2L | 23513712 | 2L | 20071360..20071516 | 605..449 | 200 | 75.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:57:30 has no hits.
UFO08950.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:51 Download gff for
UFO08950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9168-RA | 131..1203 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:48 Download gff for
UFO08950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9168-RA | 131..1203 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:22 Download gff for
UFO08950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9168-RA | 131..1203 | 1..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:22 Download gff for
UFO08950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1411218..1411473 | 1..256 | 98 | -> | Plus |
| 3L | 1411524..1412340 | 257..1063 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:48 Download gff for
UFO08950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1411218..1411473 | 1..256 | 98 | -> | Plus |
| arm_3L | 1411524..1412340 | 257..1063 | 98 | | Plus |
