UFO08951.5prime Sequence
1169 bp (1058 high quality bases) assembled on 2011-08-10
> UFO08951.5prime
CAGTCGACATGGCTGATTTGGAAGCAGTCTTGGCTGATGTCAGCTATTTA
ATGGCAATGGAAAAGTCTAAATGTACTCCAGCTGCGAGGGCAAGCAAGAA
ATTAAATTTACCCGACCCGAGTGTTAGAAGTGTTATGTATAAATATTTGG
AAAAAGAAGGCGAATTGAATTTTCATAAAATATTTAACGAAGTTTTGGGC
TATTTGTTGTTTAAAGACTTTTGTGAAAACGACTCAGAAGAACCTATACA
GCAACTTAAGTTTTTTGAACAGATAAAACTCTTTGAAAAAACAGAATGTT
ATGATGAGCGGAAAAAAATGGCAAGGGATATTTATGACAATTTTATAATG
GAGGAAATGTTGTCCCACACCTATGAATACTCCAAACATGCTGTTGCGAG
TGTACAAAAATATTTATTAAAAAATGAGGTCCCGGTTGACTTATTTGAAC
CATACTTGGAAGAAATATTTACACAACTTAAAGGAAAGCCATTTAAAAAA
TTTTTAGAAAGCGATAAATTTACTAGGTTTTGCCAGTGGAAAAATTTAGA
ACTGAACATACAACTAACTATGAACGATTTCAGCGTTCATAGAATAATTG
GACGGGGGGGTTTCGGAGAAGTATATGGATGCCGAAAAGCTGACACTGGA
AAAATGTATGCTATGAAATGCTTGGACAAAAAACGGATTAAAATGAAACA
AGGAGAAATGCTAGCTCTTAATGAAAGAAATATGCTGCAAGCAGTCAGTA
CTGGAATTGATTGTCCGTTCATAGTGTGTATGACGTATGCCTTTCATACG
CCGGATAAGCTATGTTTTATATTAGATCTAATGAATGGTGGTGATCTACA
TTACCATTTATCTCAACATGGTATTTTCAGTGAGGATGAAATGAAATTTT
ATGCAGCTGAGTGATTTGGGATTGGAACACATGCATAAACGTTGCATTGT
GTACCGAGAACTTAAACCCGCCACATACTGCTCGATGAAAACGGACACAT
ACGAATTTCTGATTTGGGGATTGGCTTGCGACTTTCTCAAAAAGAAACCG
CATGCCTTCAAGGGACTCATGGAATCATGGCTCCGGAGGGGCTTATCTAA
GAACATCTTACGATCTTGGCCCAATGTTAGCTCGATGCAGTTATTACTGT
CCTAAACGGCCATTCTCCA
UFO08951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gprk1-RC | 2519 | CG40129-RC | 179..1288 | 9..1114 | 5130 | 98.1 | Plus |
| Gprk1-RA | 2377 | CG40129-RA | 179..1288 | 9..1114 | 5130 | 98.1 | Plus |
| Gprk1-RB | 2292 | CG40129-RB | 94..1203 | 9..1114 | 5130 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4378964..4379155 | 755..564 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 4378749..4378904 | 911..756 | 765 | 99.4 | Minus |
| 2R | 25286936 | 2R | 4470770..4470882 | 121..9 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 4664929..4665033 | 375..271 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 4458153..4458257 | 375..271 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 4378511..4378690 | 1093..915 | 515 | 89.5 | Minus |
| 2R | 25286936 | 2R | 4665216..4665295 | 199..120 | 400 | 100 | Minus |
| 2R | 25286936 | 2R | 4458440..4458519 | 199..120 | 400 | 100 | Minus |
| 2R | 25286936 | 2R | 4458023..4458097 | 449..375 | 375 | 100 | Minus |
| 2R | 25286936 | 2R | 4458307..4458381 | 272..198 | 375 | 100 | Minus |
| 2R | 25286936 | 2R | 4664799..4664873 | 449..375 | 375 | 100 | Minus |
| 2R | 25286936 | 2R | 4665083..4665157 | 272..198 | 375 | 100 | Minus |
| 2R | 25286936 | 2R | 4427936..4427997 | 511..450 | 310 | 100 | Minus |
| 2R | 25286936 | 2R | 4407973..4408034 | 571..510 | 280 | 96.8 | Minus |
| 2R | 25286936 | 2R | 4449379..4449451 | 449..376 | 230 | 90.5 | Minus |
Blast to na_te.dros performed 2014-11-26 23:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 2066..2115 | 442..493 | 129 | 75 | Plus |
| BS3 | 1790 | BS3 BS3 1790bp | 1310..1342 | 1000..1032 | 111 | 81.8 | Plus |
UFO08951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:52 Download gff for
UFO08951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gprk1-RA | 181..1254 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:50 Download gff for
UFO08951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gprk1-RB | 88..1161 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:23 Download gff for
UFO08951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gprk1-RB | 88..1161 | 1..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:23 Download gff for
UFO08951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4458307..4458380 | 199..272 | 100 | <- | Minus |
| 2R | 4458441..4458517 | 122..198 | 100 | <- | Minus |
| 2R | 4470770..4470887 | 1..121 | 96 | | Minus |
| 2R | 4458154..4458255 | 273..374 | 100 | <- | Minus |
| 2R | 4458023..4458097 | 375..449 | 100 | <- | Minus |
| 2R | 4378550..4378695 | 912..1055 | 94 | <- | Minus |
| 2R | 4378749..4378904 | 756..911 | 99 | <- | Minus |
| 2R | 4378964..4379155 | 564..755 | 100 | <- | Minus |
| 2R | 4407981..4408032 | 512..563 | 100 | <- | Minus |
| 2R | 4427936..4427997 | 450..511 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:50 Download gff for
UFO08951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 266055..266200 | 912..1055 | 94 | <- | Minus |
| arm_2R | 266254..266409 | 756..911 | 99 | <- | Minus |
| arm_2R | 266469..266660 | 564..755 | 100 | <- | Minus |
| arm_2R | 295486..295537 | 512..563 | 100 | <- | Minus |
| arm_2R | 315441..315502 | 450..511 | 100 | <- | Minus |
| arm_2R | 345528..345602 | 375..449 | 100 | <- | Minus |
| arm_2R | 345659..345760 | 273..374 | 100 | <- | Minus |
| arm_2R | 345812..345885 | 199..272 | 100 | <- | Minus |
| arm_2R | 345946..346022 | 122..198 | 100 | <- | Minus |
| arm_2R | 358275..358392 | 1..121 | 96 | | Minus |
