UFO08952.5prime Sequence
1130 bp (1000 high quality bases) assembled on 2011-08-10
> UFO08952.5prime
CAGTCGACATGGCCACTGGCATCGAGCTGCTGGTGGCCGCCGCCCTCTGT
GTCGCCTGTCCGCCGCTGAACGATTCCCCGCCGACGAACCTAATCCAAAT
GGGCGAGAATGGCACTCTTTCCCCGGTCACCGAGCTGCCCATGGATGTGG
ACGCATCGGAAGCTGGATTCGATGCGGATGCCCCCGTGGAGACGCTGGAG
ACCATTAACAGGAAGAAGCCGAAGCTGCGGGAGATGCTCGATTGGATCGG
CGGCAAGCACCTGCGCATCGCTACCCTGGAGGACTTTCCGCTCAGCTACA
CCGAGGTCCTGGAGAACGGCACCCGTGTGGGGCACGGAGTCTCCTTTCAG
ATCATCGACTTCCTCAAGAAGAAGTTCAACTTCACCTATGAAGTGGTCGT
GCCCCAAGATAACATCATCGGCTCGCCTAGCGACTTTGATCGCAGTCTCA
TCGAGATGGTAAACAGCAGTACGGTGGACTTGGCGGCGGCCTTCATACCC
TCGCTCTCTGACCAGCGCAGCTTCGTCTACTACTCCACAACGACGCTGGA
CGAGGGCGAATGGATAATGGTGATGCAGCGTCCCCGCGAGTCGGCTAGTG
GGTCCGGACTGCTTGCGCCCTTCGAGTTCTGGGTGTGGATCCTGATCCTC
GTCTCGCTGCTGGCCGTGGGGCCGATCATCTACGCGCTGATCATCCTGCG
AAATCGGCTGACCGGCGACGGCCAGCAGACGCCCTACTCCCTGGGCCACT
GCGCTTGGTTCGTCTACGGAGCGCTGATGAAGCAGGGCAGCACCCTGTCG
CCCATTGCAGACTCGACGCGGCTGCTCTTTGCCACCTGGTGGATTTTCAT
CAACGATACTGACGTCCTTCTACACGGCCAACTTGACCGCCTTCCTGACC
CTTTCCAGTTCACGCTGCCGTACAACACGGTCCACGATTATCTCACGAAG
AACCAGCACTTTGTGTCCATGCCGGGGCGGTGGAGTGGAGTACCGCATTT
CGAACGACCATGAATCCTTGTCAATGCTAACCGATGATCCAGAACCACTA
CCCCGTATTCCCGACGAACAACGACCTTCAATCTGCAGACTACTGTAAGA
ATGATATGTCTTTTGGTGAGGACTGGCGCG
UFO08952.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir76b-RA | 2308 | CG7385-RA | 98..1184 | 9..1089 | 4980 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20110976..20111437 | 470..9 | 2310 | 100 | Minus |
| 3L | 28110227 | 3L | 20110565..20110904 | 810..471 | 1700 | 100 | Minus |
| 3L | 28110227 | 3L | 20110236..20110426 | 993..802 | 740 | 95.9 | Minus |
Blast to na_te.dros performed 2014-11-26 23:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3595..3685 | 266..176 | 122 | 62.4 | Minus |
UFO08952.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:53 Download gff for
UFO08952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir76b-RA | 87..1168 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:51 Download gff for
UFO08952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir76b-RA | 87..1168 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:25 Download gff for
UFO08952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir76b-RA | 87..1168 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:25 Download gff for
UFO08952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20110224..20110417 | 811..1006 | 94 | <- | Minus |
| 3L | 20110565..20110904 | 471..810 | 100 | <- | Minus |
| 3L | 20110976..20111441 | 1..470 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:51 Download gff for
UFO08952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20103324..20103517 | 811..1006 | 94 | <- | Minus |
| arm_3L | 20103665..20104004 | 471..810 | 100 | <- | Minus |
| arm_3L | 20104076..20104541 | 1..470 | 99 | | Minus |
