UFO08953.5prime Sequence
1151 bp (1046 high quality bases) assembled on 2011-08-10
> UFO08953.5prime
CAGTCGACATGAGTGGCGTGCTGCGTCGCGGTTCCCTGAATTTCGATTGC
GTTGGCGGGCCGCGGGACAAGGGCAGGGGCAGCCTGGAGGCGAACCTGTA
TGGCGGATATCGCGAGACAAGGCCCGGCCCAAAGACTCCGGAAATCAGTG
TCATAGCATTGGACTTTCGACGATATTCCGAGGACCTGAAGAAACCACCT
TCAGCGGAGCAAACGGAGCAGCCACCGAGCAGGGATCTCAGTCAGGATGA
GGACAGCGATGTGATATCAAATTTCCTGGGCCACTACACCCGCTGGAGTT
TTCTTTGGACCCTGCTGCTCTGCCTGTTCCAGTTGCCCACCACTTTTCAC
CTGTTCATGTTTGTCTTCCAGATTGCGCCGAAAGACTTTTGGTGTGCCCG
GCCGGAAAACCTCATGCAGATGAGCGTTTCCGAGTGGCGCAATATTAGTC
AGTCCTCCAATGGCTGCCTGCTCCTCGATGTGGACTACACCCAGGTCACC
TACGAGAATAACCAACTCATCAACTGGCCCGAAAATGCCACAGATTTGGG
CTACCGACAGTGCTGGCACTTTGAGTTCTCCGACGTGGATGGATCGGCCA
AGACCCTGGTGCAGGAATTTGATCTGGTTTGCGGACGCGATATCCTCAGC
TTGGTGGAAACCTGCTTCCTGGTGGGCGCGGCAGCGGGAGCGGTTCTCAG
CGGATGGATATCGGATCGCTTCGGCAGAAGACACACTCTAATGGCATTCG
TCACTATTCAGAGCGTATTTGGTGGAATTTTGGCCTTCTCAACATCGGTG
GCCATGTTCATGTCGCTACGTGTTATAATTGGATTCGCATCAATGACCGT
GACTGTTGTGAGCTTCGTGCTGGTGGTGGAGCTGGTCTCCGGCAAGTGCG
CACCGTAATCGGCATTCTCAACATTCTGCCCGTGGCCATCTCCTACGTCC
TCTCGCCGGACTGGCCTACTCATCCGCGACTGGCGCACCTCCAGCTGGCC
ATCTCCTACATGGCTATCATGCTCAGCATTGGTTCTTGGCTGCCGGAGTC
TCCACGCCTGCTTTTGCCCAAGGGCCGGCTGGACCGGCTGTGCCACTATT
TGAGCGAACCGGTCGATGATGGACCACGCCAGTGCCTAGCACTATCGCAA
G
UFO08953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8925-RB | 2206 | CG8925-RB | 162..1324 | 4..1151 | 5175 | 97.2 | Plus |
| CG8925-RA | 2398 | CG8925-RA | 716..1516 | 366..1151 | 3380 | 96 | Plus |
| CG8925-RA | 2398 | CG8925-RA | 162..529 | 4..371 | 1825 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16177531..16177945 | 360..774 | 2030 | 99.3 | Plus |
| 3R | 32079331 | 3R | 16172152..16172519 | 4..371 | 1825 | 99.7 | Plus |
| 3R | 32079331 | 3R | 16178396..16178636 | 771..1007 | 1005 | 98.3 | Plus |
| 3R | 32079331 | 3R | 16179346..16179402 | 1037..1093 | 195 | 89.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:57:45 has no hits.
UFO08953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:54 Download gff for
UFO08953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8925-RB | 142..1246 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:53 Download gff for
UFO08953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8925-RB | 142..1246 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:27 Download gff for
UFO08953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8925-RB | 160..1264 | 1..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:27 Download gff for
UFO08953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16178397..16178664 | 772..1031 | 96 | -> | Plus |
| 3R | 16177543..16177942 | 372..771 | 100 | -> | Plus |
| 3R | 16172150..16172519 | 1..371 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:53 Download gff for
UFO08953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11997872..11998241 | 1..371 | 99 | -> | Plus |
| arm_3R | 12003265..12003664 | 372..771 | 100 | -> | Plus |
| arm_3R | 12004119..12004386 | 772..1031 | 96 | -> | Plus |
