UFO08954.5prime Sequence
1133 bp (1040 high quality bases) assembled on 2011-08-10
> UFO08954.5prime
CAGTCGACATGCCAGATATGAAGACACCACTGCTTGGCTTTCTTACTACA
GTGATCGCAATCTCTGCAGGTGCTCCCGACTGGCAGTTGCCCTGCGATTT
GCGCGAAACGAGCCATGGAAGCGTGTGTGTCTGCAACAGCACCTACTGCG
ATTATCTGGAACCGCCCCAGCTCACTGATATCTCGCAGATTGTGGTGATT
AGCTCCAGCAAGGATGGCTTACGCTTCAAGAAGACGACAGGGGATCTCTC
GAAAAAGAAACCCATAACAATAGATGACAAACAGTTCACCGATGAGAACT
TCAAGGCAGATGCAATTGTTGTGGATCAGGAGAGGGCCTGGTTGCAGTTG
GCCAACATTCCCCAAAGCCTGTTTATTAATGCCAGCATTAAGACATATCG
CATATTCGTGAAACGAGAGCAGAGTTTTCAAAATGTCTCCATTTTTGGTG
GGGCATTTACAGGAACAGTCTCGTACTTACTCAAAGAACTTCCGGTGGAG
CTACAGGATCATGTCTATAGATCCTATTTTCATCCGGTTGGAATTGCTTA
CAACACTATACGAATGTCCATTGGCGGTTCCGACTTTGATATGGAACCCT
GGGCATACAATGAATTGCCTCTTCATGATCCGAAATTGAGCAACTTTACC
GAACTCGATCCGCGGGATCTGCAGAAAGTGGAACAGTTGAAACGCCTTAA
GATCATCGGTAAAGTAGATTCTCTGAAAATCATGGGCGCTGCCTGGAGTG
CTCCAACCTGGATGAAGAGCAATAATCGCTGGACAGGATTCGGGCAGCTG
AAATCGGAATACTATCAAACGTGGGCCCTCTATCACCTCAAATTTCTCGA
ACTCATGCGGTCTAAAATATGCCGATTTGGGCCATATCCACTGGCAATGA
GCCGTTAAACGGCGTCATTGGCTTCTTTTTTGTACACTTCATGAGCATGG
GCTGGACGCCCTGGCAGCAGCTATCTGGCTGACGACATCTGGGCCCGAAC
ATCAGAAACTCGGCGGAGAGCAGGTGCTCATCCTTTGGGCAACGAACGAT
CAGCGGTAACCCCTACCCCACGGGGTTCCGGAAAGATGGCTCCTCCCGCC
ACATTCGCGTGAAACTACTGGATGCTTACCGGT
UFO08954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31414-RC | 2335 | CG31414-RC | 30..1150 | 5..1124 | 5175 | 98.1 | Plus |
| CG31414-RB | 2030 | CG31414-RB | 30..1150 | 5..1124 | 5175 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23705779..23706101 | 519..841 | 1615 | 100 | Plus |
| 3R | 32079331 | 3R | 23705348..23705509 | 211..372 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 23704960..23705108 | 65..213 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 23705581..23705728 | 373..520 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 23706159..23706292 | 842..974 | 605 | 98.5 | Plus |
| 3R | 32079331 | 3R | 23704833..23704899 | 5..71 | 320 | 98.5 | Plus |
| 3R | 32079331 | 3R | 23706386..23706476 | 987..1080 | 185 | 89.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:57:50 has no hits.
UFO08954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:55 Download gff for
UFO08954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31414-RB | 28..1150 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:55 Download gff for
UFO08954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31414-RB | 28..1150 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:28 Download gff for
UFO08954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31414-RB | 28..1150 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:28 Download gff for
UFO08954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23704831..23704897 | 1..69 | 94 | -> | Plus |
| 3R | 23704965..23705107 | 70..212 | 100 | -> | Plus |
| 3R | 23705350..23705509 | 213..372 | 100 | -> | Plus |
| 3R | 23705581..23705728 | 373..520 | 100 | -> | Plus |
| 3R | 23705781..23706101 | 521..841 | 100 | -> | Plus |
| 3R | 23706159..23706288 | 842..970 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:55 Download gff for
UFO08954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19530553..19530619 | 1..69 | 94 | -> | Plus |
| arm_3R | 19530687..19530829 | 70..212 | 100 | -> | Plus |
| arm_3R | 19531072..19531231 | 213..372 | 100 | -> | Plus |
| arm_3R | 19531303..19531450 | 373..520 | 100 | -> | Plus |
| arm_3R | 19531503..19531823 | 521..841 | 100 | -> | Plus |
| arm_3R | 19531881..19532010 | 842..970 | 99 | -> | Plus |
