UFO08958.5prime Sequence
1127 bp (993 high quality bases) assembled on 2011-08-10
> UFO08958.5prime
CAGTCGACATGTATGGAATGCTGTATGAGAGTGTGCAGCACTACGTGCAG
GAGGAGTATGGCGTGGACATTTGGCGGAAGGTGTGTCACATCATCGACTG
CAAGCACAATAGCTTCAAGACGCACCAGATCTATCCGGACAAGCTGATGC
CGGATATCGCCGAGGCTTTGTCCGCCTGCACGGGCGAGTCCTTCGACTTC
TGCATGAACTTCTTCGGGCGCTGTTTTGTGCGATTCTTCAGCAACTTCGG
CTACGACAAGATGATCCGCTCCACCGGGCGATACTTCTGCGACTTCCTGC
AGTCCATCGACAACATTCACTTGATTATGCGTTTCACCTATCCCAAGATG
AAGTCGCCCAGCATGCAGTTGACCAATATGGATGATAACGGAGCTGTGAT
CCTATACAGAAGCAGTCGCACTGGAATGTCCAAGTACCTAATTGGGCAGA
TGACCGAGGTGGCCCGCGAGTTTTACGGCCTGGAGATCAAGGCTTACGTG
ATCGAGAGCCAGAATGACATCAGTGGAGGCACTGCTGGTCCCATCAAGCT
CACGGATGGTCCCTTGACCGTGATTGTGAAGTATCGTCTGGACTTTGATA
ACCGGGAGTACATGGCCAAGCGCGTCAATACGGAGGCCCATCCCTCACAG
CTCAAAATGCCCACCGTGAAACTGGATGTGTTCCTCGATCTTTTTCCCTT
CACATTTGTGCTGAACCACGACATGAAGATCACGCATGCTGGTGAGAAGA
TCGTTGAGACCTGTATTATGCACAATCCAGGGGCCAATCCAAAGAGCTTC
ATTGGCACCCACGTAATGGACTTGTTCCAATGCCGTCGTCCGAAAGACAC
CACTATCGACTGGGATACCCTGATCCAGATGAGAGCCGTGCTCTTTGAGT
TCGAGTTGATTCGCACGGGTCACATCGCGCTGCCTACGATGCTGTCTTAA
ACAATGGACTTTGAGAACTATGACGAGATGGACTTAACGAAGCCCAACTA
ATGGCGCTGGCCAAGCCTCAGAGTTCATGGATCCCATCCGTGGATGGATG
ATGATCTGCAAGAAGGAATGAGATCGACCTGCCATGGACGTCGATCTCCA
GGCTGGAGGTCATCTTTGAGACAAGTT
UFO08958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyc-89Da-RC | 2339 | CG14885-RC | 231..1346 | 8..1111 | 5055 | 97.8 | Plus |
| Gyc-89Da-RB | 2274 | CG14885-RB | 166..1281 | 8..1111 | 5055 | 97.8 | Plus |
| Gyc-89Db-RA | 2784 | CG14886-RA | 540..1505 | 8..973 | 2265 | 82.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16473369..16474444 | 8..1079 | 4860 | 98.1 | Plus |
| 3R | 32079331 | 3R | 16478826..16479771 | 8..952 | 2220 | 82.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:57:11 has no hits.
UFO08958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:49 Download gff for
UFO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Da-RC | 224..1329 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:40 Download gff for
UFO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Da-RB | 159..1264 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:15 Download gff for
UFO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Da-RB | 159..1264 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:15 Download gff for
UFO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16473362..16474467 | 1..1097 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:40 Download gff for
UFO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12299084..12300189 | 1..1097 | 97 | | Plus |
