UFO08959.5prime Sequence
924 bp (182 high quality bases) assembled on 2011-08-10
> UFO08959.5prime
CAATCCACATGGATCTAGCAGATCAAATCGATGACTATATCTGTTCGTTC
GAGGGACTTGGTGACTTAACAATGGACTCCCTGGCCATCTTCATTTTCCT
GTGGGCCGTTCTGGCCCTCTTCTCCGTGTGGCTAATCAAGCTGCTCTACC
ACAAGTATCTCAACAAGGACAAGTCGGCCAGTGCGGCCAACAGTCTCCAG
ACGAGCGTGGCCCCCACATCCGGATCACCCACGTCCGTCACCGGCAAGAC
GGATAAACGTCTCTCGGAGCCGCGCGATCTCCTGGCCACCAAGAGCAAGG
TTGAAGGCTTGGACTTATCCAAGCCTCTGGCCGGCGCATCCGGTGGCCGA
GGACGTTCATCAACATCGCCATTGAATACCGCTGGTGCAGCTGCCGGCGG
TCCACGTCGTCGGGTGGTGCGTCAGATTTCCACTGGGCCATACAATCCCA
AGAAGCGCTATGTCCCACCGCCATCGAATGTCGTGGGTCCAGAAACGAGC
TCCGTCACCTGGACCAACCAAGTGTTTCGCTGGCTTTATAGCGACCTGGT
CATCGTCAACGAGCTGCTCATGTCCTGGATAATCGCCATCAACGACACGC
TGCACATGTCTGTGGAGGAGCATGGAGTGGTCATTGATGTGGTTCGAGTG
ATACCCGACAGTCCTGCCCCCGGATTGTATAATATATATTGTAATTGCGA
TGAGAACAATCCCGCAGATATGCTCATCACCTTGGACTGCGATGCAATGC
CGGTGTAGCATGTGAAGACCTTCCGCCTTTAGTCAGGCTATGTGTACACC
TCCCACTACCACGTCACTGCGCCTGAGCTCCACGCCCGAATGACATTACC
TTGAACTACTAAAGCCTCAAGGGTGAGATGCAAGTCTAGGGCTATCCGGA
TGTCTCATCGCGATGAACAGCGAG
UFO08959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10737-RN | 3107 | CG10737-RN | 240..1155 | 9..922 | 3795 | 94.4 | Plus |
| CG10737-RO | 3430 | CG10737-RO | 240..1155 | 9..922 | 3795 | 94.4 | Plus |
| CG10737-RS | 3953 | CG10737-RS | 985..1900 | 9..922 | 3795 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19170673..19171161 | 9..497 | 2325 | 98.4 | Plus |
| 2R | 25286936 | 2R | 19171252..19171375 | 497..620 | 560 | 96.8 | Plus |
| 2R | 25286936 | 2R | 19172344..19172526 | 722..903 | 445 | 84.2 | Plus |
| 2R | 25286936 | 2R | 19172177..19172280 | 619..722 | 400 | 92.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:57:15 has no hits.
UFO08959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:49 Download gff for
UFO08959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RA | 450..1250 | 9..809 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:42 Download gff for
UFO08959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RS | 985..1785 | 9..809 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:16 Download gff for
UFO08959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RS | 985..1785 | 9..809 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:16 Download gff for
UFO08959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19170673..19171161 | 9..497 | 98 | -> | Plus |
| 2R | 19171253..19171375 | 498..620 | 96 | -> | Plus |
| 2R | 19172179..19172280 | 621..722 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:42 Download gff for
UFO08959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15058178..15058666 | 9..497 | 98 | -> | Plus |
| arm_2R | 15058758..15058880 | 498..620 | 96 | -> | Plus |
| arm_2R | 15059684..15059785 | 621..722 | 92 | -> | Plus |
