UFO08960.5prime Sequence
1109 bp (1025 high quality bases) assembled on 2011-08-10
> UFO08960.5prime
CAGTCGACATGAATTTCCTGGGATTCGGCCAGTCAGCGGACATTGAGATA
GTCTTTGATGGAGCTGAGCACAAGACGGCAGAGGTTAAAGGGGAGGACGG
CAAAGTGGAGAAGATGCTGCTATTCTACGACGGGGAGACGGTATCCGGCA
AGGTGAACGTGACCCTCAAGAAGCCGGGCAGCAAGCTGGAGCACCAGGGC
ATTAAGATCGAATTCATTGGCCAGATCGAACTGTACTACGACCGGGGTAA
CCACCACGAATTCAAGTGTCTAGCGAAGGCCCTGGCCCGCCCGGGCGATC
TCATCCAGAACAACAGCTATCCATTCGATTTCCCCAAAGTGGAGAAGCAA
TTCGAGGTGTACGCCGGCTCGAACGTGCGGTTGCGGTACTTCCTGCGCGC
AACCATCGTCAGGCGGATCAGCGACATAACGAAGGAGGTCGACATCGCCG
TGCACACACTGTGCAGCTACCCGGAGATGAACAACCCCATCAAGATGGAG
GTAGGCATCGAAGACTGCCTGCACATCGAATTCGAGTATAACAAAAGCAA
GTACCACCTGCGGGACACGATTATCGGCAAGATCTACTTCCTGTTGGTGC
GCATTAAGATCAAGCACATGGAGATTGCGATCATCAAGAAGGAGAGCACG
GGCACGGGCCCCACCATGTTTAACGAAAACGAAACGATTGCCAAGTACGA
GATCATGGACGGAGCGCCCGTCAAAGGCGAGAGCATACCCATCCGGGTCT
TTCTTGCTGGCTACAATCTCACGCCGACCATGCGGGACATTAACAAGAAG
TTCTCAGTCAAGTATTTCCTCAACCTTGTGCTGATGGACACCGAGGACCG
GCGCTACTTCAAACAACAGGAGATCACGCTGTGGCGCAAGGCAGGACAAA
CCGCGTTACCATGGCGCTCAGCAGCACCAGCAACAGCAGCACCAACACGT
TCCCCTGCACGCCTCCGCCGCACCTGGTCAGCGGTCTGCTGCGCCCACAG
TGGCTCACTTCCCTGATCAGCTCGAGCACGACAAGCGAAAGTTGAAGAAC
ACCGACAGCGCCGGGCACTGCATGATCCTGAGTCCAGATGGACCTGTTAC
AGGGAGAGC
UFO08960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps26-RA | 2543 | CG14804-RA | 286..1389 | 9..1109 | 5110 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1874359..1875286 | 151..1077 | 4205 | 98.3 | Plus |
| X | 23542271 | X | 1874138..1874284 | 9..155 | 735 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..7033 | 892..1082 | 130 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6941 | 919..1077 | 129 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2277..2395 | 836..947 | 126 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2364 | 919..974 | 124 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2380 | 919..947 | 118 | 89.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3261..3307 | 901..947 | 118 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2928 | 919..1059 | 116 | 60.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1050..1149 | 850..947 | 116 | 60 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1128 | 889..947 | 115 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6854 | 920..1059 | 111 | 58.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7978 | 925..948 | 111 | 95.8 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9422 | 925..948 | 111 | 95.8 | Plus |
UFO08960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:50 Download gff for
UFO08960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps26-RA | 270..1366 | 4..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:44 Download gff for
UFO08960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps26-RA | 280..1376 | 4..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:18 Download gff for
UFO08960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps26-RA | 280..1376 | 4..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:18 Download gff for
UFO08960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1874132..1874281 | 4..152 | 98 | -> | Plus |
| X | 1874361..1875307 | 153..1098 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:44 Download gff for
UFO08960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1768165..1768314 | 4..152 | 98 | -> | Plus |
| arm_X | 1768394..1769340 | 153..1098 | 98 | | Plus |
