UFO08961.5prime Sequence
1144 bp (1027 high quality bases) assembled on 2011-08-10
> UFO08961.5prime
CAGTCGACATGCATTATTACCTGGCTGCTATCTGCCTGGTGGGCTTAATG
GGCTCAGCCCTCGGTCAGTACAACCTGGTGCAGAAGGACAACTGCATCAT
TCCAAAGATCCTGCAGGGATCGTGGTTCTCGTGGGAAACGGGCCTGCCCA
CGCTGACGGTGATCGACGCCACCTCGATGTCCAGCCGAGGCTACTGCATC
AACTACATGCGCCACAAGGGCGACGAGTACTCATTTGTCTTCAAGGAGCG
ATCCAAGGACTGCTATCACTGTGTCAGGACCATCATCCGCACCCTTAATG
TGTTCGAAAAGTTTGAGGGGCCCTGCGTGGGCATACCCGCTGGACAGGAA
CCCACCGTGGACTATGTGTGTCGTGGTGTTAAGGATGACCAGCAGTTGAT
AACGCTCTTTAACGAGAACTTTGTGCCCATCAACTGCCGATCGTCGCTGG
AGGGAGTGTGGCATTTTACGTACCAGAACCGATTCCGATTCACGGGCGTA
TGCGATAAGCCCGACGCTCGCATTCAGTCCTGTCAAACGGCAGGAACGCA
GTTCCTCATCCAGAACCAGAAGTTCAACGTCACCTATCAGCAGTGCGAGG
GTATGGAGGGCACATTCACCGGCACCGTGGAGTTCAGCTGCCTGGGCGAT
TGGTTTGTGGGCAAGAACCACTACTTTGCCGTGGCCAACACAAAGGAGTC
GCGTAAGGATGAGAAGTACCGCTGCTTCCTTAAGAATCGTGACGATGATC
TTTACGTGGGCGTTTCCATTACGGCCGAATGTAACACACTGAAGACGCCA
GAAACGTCACCGGAGCGTCTAAAGCTGACGCCAGTGAAGGCTGAGTTTGT
GGAACCCGGGTTGCACGCTACCACAAAACTTTAGCGGAGAATGGGTGACA
CTGCCAACATTGATGCCGATGTCTCGATCAGTGAGACCCACATAAACGAG
ACGTACTATCCGGGAAAAAGCTCGATACCGAAAGACCATCTATGTTTGCC
GAGAGCGGACGGGGGTATCGTGTGATGATGCTCCGCCTCACTGTCGACGT
GCCAGATGATTACGTGGTGCCTTTGACTATGGCCCGGCCCACCCAAACAT
CATTCGCTACCGCAAGGTTGGCTGTGATGATCAGACGATTTAGA
UFO08961.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10217-RB | 2167 | CG10217-RB | 64..1184 | 9..1128 | 5140 | 97.8 | Plus |
| CG10217-RA | 2262 | CG10217-RA | 159..1279 | 9..1128 | 5140 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23761860..23762432 | 1049..475 | 2575 | 98.1 | Minus |
| 3R | 32079331 | 3R | 23762549..23762970 | 476..55 | 2110 | 100 | Minus |
| 3R | 32079331 | 3R | 23763057..23763105 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:58:05 has no hits.
UFO08961.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:57 Download gff for
UFO08961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10217-RB | 50..1180 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:00 Download gff for
UFO08961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10217-RA | 153..1283 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:32 Download gff for
UFO08961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10217-RA | 153..1283 | 1..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:32 Download gff for
UFO08961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23761774..23762430 | 477..1134 | 95 | <- | Minus |
| 3R | 23762549..23762967 | 58..476 | 100 | <- | Minus |
| 3R | 23763057..23763109 | 1..57 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:00 Download gff for
UFO08961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19587496..19588152 | 477..1134 | 95 | <- | Minus |
| arm_3R | 19588271..19588689 | 58..476 | 100 | <- | Minus |
| arm_3R | 19588779..19588831 | 1..57 | 92 | | Minus |
