UFO08962.5prime Sequence
1107 bp (1026 high quality bases) assembled on 2011-08-10
> UFO08962.5prime
CAGTCGACATGGCTAAAGCGTTGCCGCTCATCAGTTGTGACTCTTGGGCC
GATAGCATAAATGAGGAAGATGTGGAGCCCAAATTTAAGTATCACCGTCT
CGCAAATGATTTAAAATACATGCTCAACGCTGATGTCATCACTTGTAGCG
CTGTACACTTAAAGTTTCTTATATTTGGAACTTTCCGAGGACGTGTTTGT
ATATTTGACCATCAAGGAAACTCAGTCTACTCAAATCTTAGCGCTAGCGA
ACGTCACACTCACCAAGTGGCAGTAAACAATATAGATGTAGATCATAAGG
GCGAGTATGTGGCCACATGCTCCGACGACGGAAAAGTTAACATAACGGGA
TTGTTTAGCTCTGATAACAATCACAGTCTCAGCTTTGGCAAATTTATAAA
GGTCGTATCACTGGAGCCCGATTCCAAAGCTCACATTAAAAGATTTGTAG
TGGGCGACGACAAACTTATCTTGTACGAGCGAAACTTGCTAAAGAAGCTT
AAACCAGTTGAACTGTGCTCAGTCGAAGGCAGTGTTTTGTCAATCTGCTG
GCATGGCAACTTTATTGCCTGGGCAAGTCACATAGGAGTTCGAGTCTACG
ATTTAAACGAAAGATGCTCACTTGGATTAATAAAGTGGGAGGTTCCTCCT
CAGGAGCGATTAGAAAATTTTCGATGCCACCTTCGTTGGTCCAACAAGCA
TACATTATTAATTGGCTGGGTAGACACTATTCGAGTTTGCGTAATTCGAA
AGAGAAATTCAATCGAAGCTTCAACTGGCAATCTGCCTGTCTACATTGTG
GATCCAATCTCGACATTTCAAACAACTTTCTACGTATGTGGGCTTGCACC
ATTATCTGCAAAGCAATTGGTTGTTCTTGGCTTTCGCAAGGAAAAAAGCT
CTTGTTTTAAAGCCCTACGACCTGTATTATGCGTTATTGATACAAATGAT
ATAGCGAGGAAATCTGCACAGACAGTTTACTTTACGCGGCTTTGGAGGAG
TACACCCGTGATGACTATTAGTCTGGGTGGCATAATCGAGGAGAATCGCT
TTATATTGTGACCCGAAGAATTTGTGGTAGCTAGTCTTATTCACGATGAT
TCGTATG
UFO08962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lt-RF | 5316 | CG18028-RF | 102..1190 | 9..1091 | 5115 | 98.6 | Plus |
| lt-RE | 4404 | CG18028-RE | 102..1190 | 9..1091 | 5115 | 98.6 | Plus |
| lt-RA | 2804 | CG18028-RA | 102..1190 | 9..1091 | 5115 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22925565..22925919 | 453..807 | 1775 | 100 | Plus |
| 2L | 23513712 | 2L | 22927438..22927727 | 808..1091 | 895 | 93.5 | Plus |
| 2L | 23513712 | 2L | 22925158..22925332 | 163..337 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 22924982..22925107 | 39..164 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 22925381..22925499 | 336..454 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:58:10 has no hits.
UFO08962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:58 Download gff for
UFO08962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RA | 110..1210 | 9..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:03 Download gff for
UFO08962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RA | 102..1202 | 9..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:34 Download gff for
UFO08962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RA | 102..1202 | 9..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:34 Download gff for
UFO08962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22924982..22925107 | 39..164 | 100 | -> | Plus |
| 2L | 22925160..22925330 | 165..335 | 100 | -> | Plus |
| 2L | 22925381..22925498 | 336..453 | 100 | -> | Plus |
| 2L | 22927438..22927739 | 808..1100 | 93 | | Plus |
| 2L | 22924896..22924925 | 9..38 | 100 | -> | Plus |
| 2L | 22925566..22925919 | 454..807 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:03 Download gff for
UFO08962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22817628..22817657 | 9..38 | 100 | -> | Plus |
| arm_2L | 22817714..22817839 | 39..164 | 100 | -> | Plus |
| arm_2L | 22817892..22818062 | 165..335 | 100 | -> | Plus |
| arm_2L | 22818113..22818230 | 336..453 | 100 | -> | Plus |
| arm_2L | 22818298..22818651 | 454..807 | 100 | -> | Plus |
| arm_2L | 22820170..22820471 | 808..1100 | 93 | | Plus |
