UFO08963.5prime Sequence
1090 bp (1003 high quality bases) assembled on 2011-08-10
> UFO08963.5prime
CAGTCGACATGGCCACCTTATCGACACACCCCAATTACGGTTTCCATTTG
GGTCAGGCCCAAGGCTTGGAGGACTACGCACCGCAAAGTCAGCTCCAGCT
GAGTCCCGGCATGGACATGGATATCAAGCGTGTGCTGCACTACTCCCAAA
GCCTGGCAGCCATGGGCGGATCGCCCAATGGACCCGCCGGCCAGGGTGTG
AACGGATCCTCGGGCATGGGTCACCACATGTCCAGTCACATGACCCCGCA
CCACATGCACCAGGCGGTCTCCGCCCAACAGACCTTGTCGCCCAACAGTT
CCATCGGATCCGCCGGCAGTCTGGGTAGCCAGAGCAGCCTGGGCAGCAAT
GGCAGTGGTCTCAACTCCAGTTCGGGTCACCAGTCCGCCGGCATGCACAG
TTTGGCCACATCGCCGGGACAAGAGGGTCACATCAAGCGTCCAATGAACG
CGTTCATGGTCTGGTCCCGCCTGCAGCGTCGTCAGATCGCCAAGGATAAC
CCCAAGATGCACAACTCTGAGATCTCCAAGCGCCTGGGTGCCGAGTGGAA
GTTGCTGGCCGAGTCGGAGAAACGACCATTCATCGATGAGGCCAAGCGCT
TGAGGGCCCTGCACATGAAGGAGCACCCGGACTACAAGTACCGGCCACGC
CGCAAGCCCAAGAACCCACTGACCGCTGGACCCCAGGGTGGACTGCAGAT
GCAGGCCGGCGGCATGGGTCAACAGAAGTTGGGAGCTGGACCGGGAGCTG
GAGCCGGAGGCTACAATCCATTCCATCAACTACCGCCATACTTTGCACCC
TCACACCATCTGGATCAGGGTTATCCAGTGCCGTACTTCGGTGGATTTGA
CCCACTGGCTCTATCGAAATTGCATCAATCTCAGCAGCGGCGGCGGCGGC
GGTCAACATCAGGTCAGCAGCAAGGACAGCCCCGCCCCAATTGCCGCCCA
CCTCGCTGAGCAGCTTCTACTCGGGCATTTATCGGCATCTCGGCACCTTC
GCTGTTACGCCGCACACTCCGCCAATGCCGCCGACTCTTACCCATCCTCG
TCCACCTCCCTCGCCGGAATCTCGCCCGACATCAGTAATG
UFO08963.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D-RD | 2619 | CG5893-RD | 1207..2281 | 9..1078 | 5095 | 98.8 | Plus |
| D-RC | 1928 | CG5893-RC | 200..1274 | 9..1078 | 5095 | 98.8 | Plus |
| D-RB | 1612 | CG5893-RB | 200..1274 | 9..1078 | 5095 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14176283..14177338 | 1059..9 | 4880 | 98.8 | Minus |
| 2L | 23513712 | 2L | 8827031..8827252 | 435..656 | 555 | 83.3 | Plus |
| 3L | 28110227 | 3L | 14106544..14106717 | 602..429 | 315 | 78.7 | Minus |
| 3L | 28110227 | 3L | 14125084..14125194 | 539..429 | 240 | 81.1 | Minus |
| 3L | 28110227 | 3L | 14118630..14118698 | 605..537 | 210 | 87 | Minus |
| 3L | 28110227 | 3L | 14104829..14104889 | 663..603 | 185 | 86.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:58:15 has no hits.
UFO08963.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:58 Download gff for
UFO08963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D-RA | 1199..2281 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:04 Download gff for
UFO08963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D-RB | 192..1274 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:35 Download gff for
UFO08963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D-RB | 192..1274 | 1..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:35 Download gff for
UFO08963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14176264..14177343 | 1..1078 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:04 Download gff for
UFO08963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14169364..14170443 | 1..1078 | 98 | | Minus |
