UFO08967.5prime Sequence
1163 bp (1045 high quality bases) assembled on 2011-08-10
> UFO08967.5prime
CAGTCGACATGATTGTGAAAATCAGCTGGCCCAAGAACAACATAACAAGC
GAATGCTTCCGGCGGTTTGGATCTTTTAAAAGACGCTCAAAATCGAAGAA
AATGTCAGCATTCATCGAGGAAACAAAAAGCCTGCTGCCGCGGATCGCCT
TCATAGCCTGCGGATGCTTCAGTCCACCCACACCCATGCACCTTCGGATG
TTCGAGATAGCCAAGGACCACTTCGAAATGCAGGGAACCCACAGAGTGGT
AGGTGGCATCATCTCGCCCACGCACGACTCATATGGCAAAAAGGGTCTGG
CCTCCGCCTTGGACAGATGTGCCATGGTCAAGCTGGCCACCCAGAGCTCC
AATTGGATTCGGTTGTCCGATTGGGAGGTGCACCAGAATCAGTGGATGCG
CACGCAGGCGGTGCTCCAGCACCACCAGAACTATATCAATAACCACATAA
ATTCCGGCGGGGGAGGCGGAGATGACGGGGAGAACACACATCTACCCGGA
TGGCTGCCTCGTGGGTTGCACGACAGTCGGGATCCTGTACATCTGAAGCT
ACTGTGCGGTGCCGATCTGCTGGAGTCCTTTGCTGTTCCAGGCCTATGGG
CAGAGGCCGATATTGAGGACATTGTGGCTAACCATGGTTTGGTAGTTATC
ACCCGGGCCGGCTCAAACCCAGGAAAATTCATCTTTGACTCCGACATATT
GACCAAGTATCAGAGCAACATTACGCTAATCACCAACTGGGTGCCTAATG
AGGTGAGCTCCACGTTGATTCGGCGGCTCTTAGGACGCGGCCAGTCGGTC
AAGTACCTTCTAGACGATCTGGTGCTGGAGTACATCAAGCGCCAACGATT
GTTTAACTTTAAATCTAAGTATATAACGGATGCGGTGCGTCCCAACCATT
TGCTCTTTAACCACGCCTATACGGACAACAACAAGAACGCGAACAGCTAC
TCTATAGCGACCAGCTGGAGCAGGACATGGACGAGTCGGACACCTCCAAG
CCCGCACTGCAGCATACGCCCTACGTCGCGGGTTTTCTGCTGCGGGAGGG
TGCCTTACTGGATCCAAGGTGGCTGCATCGGTCCTGGACAGCGGTGCAGG
TCATCACCATGCAGGCGGATTGTAGAGGAGTCAGCAAGAAGCGAAGAATT
TCCAAGTGTCACC
UFO08967.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:58:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmnat-RA | 1287 | CG13645-RA | 22..1137 | 9..1120 | 5300 | 98.8 | Plus |
| Nmnat-RC | 1214 | CG13645-RC | 1..1064 | 61..1120 | 5040 | 98.8 | Plus |
| Nmnat-RB | 1236 | CG13645-RB | 22..878 | 9..865 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24945525..24945932 | 204..611 | 2040 | 100 | Plus |
| 3R | 32079331 | 3R | 24945258..24945453 | 9..204 | 980 | 100 | Plus |
| 3R | 32079331 | 3R | 24946884..24947142 | 866..1120 | 790 | 93.1 | Plus |
| 3R | 32079331 | 3R | 24946140..24946295 | 710..865 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 24945984..24946085 | 612..713 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:58:20 has no hits.
UFO08967.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:59 Download gff for
UFO08967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmnat-RA | 22..1144 | 9..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:05 Download gff for
UFO08967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmnat-RA | 22..1144 | 9..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:36 Download gff for
UFO08967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmnat-RA | 22..1144 | 9..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:36 Download gff for
UFO08967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24946144..24946295 | 714..865 | 100 | -> | Plus |
| 3R | 24945258..24945453 | 9..204 | 100 | -> | Plus |
| 3R | 24945526..24945932 | 205..611 | 100 | -> | Plus |
| 3R | 24945984..24946085 | 612..713 | 100 | -> | Plus |
| 3R | 24946884..24947149 | 866..1130 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:05 Download gff for
UFO08967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20770980..20771175 | 9..204 | 100 | -> | Plus |
| arm_3R | 20771248..20771654 | 205..611 | 100 | -> | Plus |
| arm_3R | 20771706..20771807 | 612..713 | 100 | -> | Plus |
| arm_3R | 20771866..20772017 | 714..865 | 100 | -> | Plus |
| arm_3R | 20772606..20772871 | 866..1130 | 93 | | Plus |
