UFO08968.5prime Sequence
1172 bp (1052 high quality bases) assembled on 2011-08-10
> UFO08968.5prime
CAGTCGACATGCCATCACTAGCGGTGCCCCATCTAACTCCCATCTCTAAT
GAGCATTTAGTGTCTTCAAAAGAAGTTGTATTTTTCTGGAAAAATCGCAT
TGAAATGTTTGAAAAGAAGAGCGACAAGGTTAAGCAAGCGGAGCACAAGG
CCCGGGATGATGGCGTAGAGCTGGAGAGCCAGTTTATCATGCGCGTGCCG
AAGGAACTGGCGGACACGGTCCATGAGGCAATAAATGCTGGCACCATTAA
GGACCGGCTGACCATCCAACTGGATCCGGATCTGAGGTACGGTGAAGTGC
GAATAGATGATCAGATACTGTACACGAAACTCGTGGATTTGCCCACCGTC
GTCGAGAGCTACAAGACCATTGACAACAAGAGCTTCTACAAGTCGGCAGA
CATCTGCCAAATACTCATTTGCAAGGAGGAGCGGGAGGACGAGACGGAAA
AGGAGTCGCCCAACAAGAACAAAAAGAAGGACCCCAACAAGGTGGACAAA
AAATACCTCTTTCCGCACGGCATCACACCGCCGTGCAAGAATGTGAGAAA
ACGACGATTCCGCAAAACTCTGAAGAAAAAGAATGTCGAAGCTCCCGAGA
TTGAGAAGGAAGTGAAACATCTGCTGCGCATTGACAACGAGGCTGTCAGA
GTTGACTATGAAATCATAAACGAAGAGGACAAGCCAATGGATGAACTGGA
GCAATCGGACATCAAACCCTACAACGATGCGGATGACGATTTGCAGGACG
AAAGCACCATGCATGCCAGCGAAAAGACGATCATGGAAATGAGCTCCCAG
CGGCACCTCCAAGTGGAGTCCGATGATGACGAAGCCAGCAACTTTCCCTC
ACACCGGGCGCCGAACATGGGAGTTGCTGTCCACGACATCTTCGGCGAGG
AAGTGTCCAGCACGGATGACGAGGATGAGCCCGATCGGGGCAATACACCA
TGCAGCGGCGGGGTGATGGAGGAATCCTCACGACTCTCGGCTGATGATTC
CACGAATGTCGGACTTCTTTGGCGCTAGGTGGCAGTAAATACTGGGAGCG
GGGCGTAATGAAATGGGAGACAGAACCGGTGTCAGCAAGTTCTTATGTTT
GACATTGAGCCAGCAGTCCTTAAGGCTCAACGCCCGCCGATCAAGGCTCC
AACCTTGGCGTCGCTCCCAGAT
UFO08968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf7-RA | 2261 | CG2670-RA | 229..1366 | 9..1157 | 5200 | 97.7 | Plus |
| Taf7-RB | 1489 | CG2670-RB | 1..1125 | 22..1157 | 5135 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7907878..7908707 | 198..1028 | 3995 | 99.5 | Plus |
| 3R | 32079331 | 3R | 7907625..7907820 | 9..204 | 980 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 3967..4006 | 92..131 | 128 | 80 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 3223..3262 | 92..131 | 119 | 77.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 1770..1809 | 92..131 | 119 | 77.5 | Plus |
UFO08968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:15 Download gff for
UFO08968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf7-RA | 224..1247 | 1..1028 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:52 Download gff for
UFO08968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf7-RA | 224..1247 | 1..1028 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:35 Download gff for
UFO08968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf7-RA | 224..1247 | 1..1028 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:35 Download gff for
UFO08968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7907620..7907819 | 1..203 | 98 | -> | Plus |
| 3R | 7907884..7908707 | 204..1028 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:52 Download gff for
UFO08968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3733342..3733541 | 1..203 | 98 | -> | Plus |
| arm_3R | 3733606..3734429 | 204..1028 | 99 | == | Plus |
