UFO08969.5prime Sequence
1137 bp (1028 high quality bases) assembled on 2011-08-10
> UFO08969.5prime
CAGTCGACATGCGGAAGCTTTGTTCGAGTGAGTCAGTTTGTTCTGGAATT
GAGGTTGAAATTGAAAATAATAACAATAATCATATTCATCATGGCGAGAC
AACGTATCACATGAAAATACTGGTGCCCGCGGTGGCCTCCGGGGCCATCA
TTGGCAAAGGTGGCGAGACGATCGCCTCCCTGCAGAAGGACACGGGTGCT
AGGGTCAAGATGTCCAAGTCGCACGACTTCTACCCAGGCACCACCGAACG
CGTGTGCCTGATCACCGGCTCCACGGAGGCTATCATGGTCGTGATGGAGT
TCATCATGGACAAGATCCGCGAGAAGCCCGACCTGACCAACAAGATCGTC
GATACCGACTCAAAACAGACACAGGAGCGCGACAAGCAGGTCAAGATCCT
GGTGCCCAACTCGACCGCCGGCATGATCATTGGCAAGGGCGGTGCCTTCA
TTAAACAGATCAAGGAGGAGAGCGGCTCCTATGTCCAGATCTCGCAGAAG
CCCACGGATGTGTCGTTGCAGGAGCGCTGCATCACCATCATAGGCGACAA
GGAGAACAATAAGAACGCCTGCAAGATGATCCTCTCGAAGATCGTCGAAG
ATCCCCAGTCGGGCACCTGCCTGAACGTATCCTACGCGGACGTCAGCGGC
CCGGTGGCCAACTTTAATCCGACCGGCTCCCCGTACGCCACCAATCAGAA
TGCCATCAACTCGAGCACCGCTTCGTTGAACTCCACGTTGGGCACCACGA
TCGGCGGTGCAAACTCGGCGGCCAGCCTGCTAGTCAACGGCACCGGCATC
AATTTGTCCATCAATCTGGGCTCACCCAATCCGGCGCCCAATCTAGCGGT
TGCCACACAGCTGCTCGAGCATATTAAGGTTGCCATGCGCGGCTCTGGCT
ATTCGGAGACCGTAACGAACGAAGTTGTCGCCGCTCTGAGCGTGCTGGCC
AAGTACGCGTCCTTGGAATGGGGCGTGGGTGTGTCGCACACCAACGCGCC
CACTCACCCTGGCAACTTCCTTGGGCGTTACGACGCTGGACAGCAGAAAG
GCGCTGCCGCATTCTTGCGCCACCGCCAGCAATGGTGTCCGTGCCGTTGA
CAGGTTAATTCTGGAACAATGCGCAACGGTACCTCTG
UFO08969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-RB | 4508 | CG8144-RB | 139..1252 | 9..1120 | 5130 | 98 | Plus |
| ps-RJ | 2558 | CG8144-RJ | 139..1252 | 9..1120 | 5130 | 98 | Plus |
| ps-RR | 3624 | CG42670-RR | 1224..2318 | 28..1120 | 5035 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9445252..9445898 | 235..881 | 3235 | 100 | Plus |
| 3R | 32079331 | 3R | 9445043..9445188 | 93..238 | 730 | 100 | Plus |
| 3R | 32079331 | 3R | 9445967..9446212 | 877..1120 | 595 | 89.2 | Plus |
| 3R | 32079331 | 3R | 9444011..9444077 | 28..94 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:53:26 has no hits.
UFO08969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:16 Download gff for
UFO08969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RB | 132..1238 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:54 Download gff for
UFO08969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 132..1238 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:37 Download gff for
UFO08969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 132..1238 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:37 Download gff for
UFO08969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9444011..9444076 | 28..93 | 100 | -> | Plus |
| 3R | 9445044..9445187 | 94..237 | 100 | -> | Plus |
| 3R | 9445255..9445895 | 238..878 | 100 | -> | Plus |
| 3R | 9445969..9446198 | 879..1105 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:54 Download gff for
UFO08969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5269733..5269798 | 28..93 | 100 | -> | Plus |
| arm_3R | 5270766..5270909 | 94..237 | 100 | -> | Plus |
| arm_3R | 5270977..5271617 | 238..878 | 100 | -> | Plus |
| arm_3R | 5271691..5271920 | 879..1105 | 91 | | Plus |
