UFO08972.5prime Sequence
1135 bp (1027 high quality bases) assembled on 2011-08-10
> UFO08972.5prime
CAGTCGACATGGCAGTGCGCTACGAGCTGGCTATTGGCCTGAACAAGGGC
CACAAGACCTCGAAGATCAGGAATGTGAAGTACACCGGCGACAAGAAGGT
CAAGGGTCTGCGCGGATCGCGCTTGAAGAACATCCAAACCCGCCACACCA
AGTTCATGCGCGACTTGGTCCGCGAGGTCGTTGGCCACGCTCCCTATGAG
AAGCGCACCATGGAGTTGCTGAAGGTGTCCAAGGATAAGAGGGCCCTGAA
GTTCCTCAAGCGCCGCCTGGGCACCCACATCCGTGCCAAGAGGAAGCGTG
AGGAGTTGTCCAACATCCTCACCCAGCTGAGGAAGGCCCAGACCCACGCC
AAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
GAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAG
AAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCA
GGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAAT
AGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGA
AACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCA
GTTTGCTCATGTAAACGTGTAACAAAGGGTGAACACTATCCCATATCACC
AGCTCACCGTCTTTTCATGCCATACGAAATTCCCGATGAGCATTCCTCCA
GGCGGCAGAATGTGGGATAAAGGCCGGAATAAACTGTGCTATTTTTTCTT
TACGGTCCTTTAAAGGCGTATATCAAGCTTGACCG
UFO08972.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL36-RE | 493 | CG7622-RE | 22..366 | 9..353 | 1725 | 100 | Plus |
| RpL36-RC | 592 | CG7622-RC | 132..476 | 9..353 | 1725 | 100 | Plus |
| RpL36-RD | 535 | CG7622-RD | 75..419 | 9..353 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 628465..628686 | 353..132 | 1110 | 100 | Minus |
| X | 23542271 | X | 628751..628873 | 131..9 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:53:35 has no hits.
UFO08972.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:17 Download gff for
UFO08972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL36-RB | 88..435 | 9..357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:59 Download gff for
UFO08972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL36-RB | 95..442 | 9..357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:40 Download gff for
UFO08972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL36-RD | 75..422 | 9..357 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:40 Download gff for
UFO08972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 628465..628686 | 132..353 | 100 | <- | Minus |
| X | 628751..628881 | 1..131 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:59 Download gff for
UFO08972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 522498..522719 | 132..353 | 100 | <- | Minus |
| arm_X | 522784..522914 | 1..131 | 97 | | Minus |
