UFO08974.5prime Sequence
1102 bp (1009 high quality bases) assembled on 2011-08-10
> UFO08974.5prime
CAGTCGACATGTTCTGCACGGAGAGCTGTGAGCACGGATGCAATGCAACC
TCGTCGGGCAAGCTGATCGCCAATGGAAACGGTGGCGGCCTGCAGTCGCA
GGGAAATTCACAGCATCAGTTCACCATGTCCTACGCTCCACTGTCGACCA
ACGATGTGCCCTCCAAGTCCGAGGTGGAACCACCGCGACTGGGCATGTGC
CTGGTCACCGAGTGTCCAGAGGGTCTGAGCATTGACTGCAATGTGCCACT
GCCGAATTCTTTCAATTTGGATGAATACAAAAATCACATGATCTGCTCGA
GCTGTACCCAGTTCAATGGTGGCTTGGACAGATTTGGCCAGCCAGGTACA
GCCGGTCCAAGTGCCAGTCCTAGTGCCAATCCATATCCAACTCCGATGCC
CAATCCCATCCAGGCCTCTCCTTGCAGCTTTCATGGCCAGTGTTGTTCAG
CCGGTGGACCATGCGCTGGATATGATTCGCAGCCAAATCCATCAAGATGC
TATCGACAGGAATCATCGTTGGCTCAAGGAGCCCCAGCGATGCCGCAGAT
CTTTTGCCTGGCACCACCCAGTTCCCATGGTGGCTTAAATCAGCCCGTTT
ACTTGTGCAGCCTGATTCCAGTTCCGCCATCGTGGAACCTGGTGCCGCTG
GCCCAACCGCAGCACTTGACGCATCAGCAGCTGCTGACGAATCCCGCACA
GGACTCGCAGCTGCCGTTGCAGCAATTGGTGCAGTACGACCTGTCCTTCA
ATCGCCTGCTGGCCGAATTGCGCAAGGAACGGGAGAGGTCCTGTTGTGAC
CTGCAGATCCCCCAGCCTCTGGCTTTCCAGCTGTATGCGCCCACGGTTAG
GTTTCTTGATCAGCCAGATTCCAGTTCGGCGAAGAGAGAGCCTCATTGCC
CGCCGGCAGCTCCTTGTGCTCTCAGCTGCACCACCACAACCACATCTCGT
CATCATCCCCAACAGCACATCTGCCTCGCCGCGGGCTGCCCAGAGCTCGT
TCGGCAGCCCGACCGCAGTCGTCGTGTCTCGGAACAAGGATCTCTGGACA
GTGGCGATCGTACAAGGTCAATCCCCTGCTCTCGCCACCAAAAGCGAACG
GA
UFO08974.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hale-RA | 1384 | CG7570-RA | 94..1187 | 9..1086 | 4995 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19984667..19985497 | 1047..228 | 3585 | 98 | Minus |
| 3L | 28110227 | 3L | 19985555..19985775 | 229..9 | 1105 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver2 | 4917 | diver2 DIVER2 4917bp | 3698..3741 | 1015..1058 | 112 | 72.7 | Plus |
UFO08974.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:18 Download gff for
UFO08974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hale-RA | 85..1191 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:01 Download gff for
UFO08974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hale-RA | 85..1191 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:42 Download gff for
UFO08974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hale-RA | 85..1191 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:42 Download gff for
UFO08974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19984619..19985495 | 230..1089 | 97 | <- | Minus |
| 3L | 19985555..19985783 | 1..229 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:01 Download gff for
UFO08974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19977719..19978595 | 230..1089 | 97 | <- | Minus |
| arm_3L | 19978655..19978883 | 1..229 | 98 | | Minus |
