UFO08976.5prime Sequence
1161 bp (1020 high quality bases) assembled on 2011-08-10
> UFO08976.5prime
CAGTCGACATGCTGATCAGCATATTCAAATCGGGCATCTTCCAGTGGCAG
TACCGCCGCCAACTGCTGGTCTCTTTGAGTGCCACTCTGATAACCTTCTG
CCATGGCATCGCCCTGGGCTGGCTGTCGCCCATGCTGCCAAAGCTGCTCT
CCCCACAGGAGACGCCACTCTCCTTTTACATTGACGTGAACGAGGCCTCC
TGGCTGGGAGCAGTCATTAGCATCGGTGGCATAAGCGGAAACTTCTCGTT
TTCCTACCTGATGAACCGCTTTGGCCGAAAAGTGTCGATTTACGCCCTCG
CAGTGCCGCACACGTGCATTTGGTTCCTGTTCTATTTCGCCCAGAGCATC
GAGTGGCTCTATGTGGCCAGGGTGTTTGCCGGCCTAACTGGCGGCGGCAT
GTTTGTCGTCTTACCCATCTTCATTGGCGAAATCGCCGACAATAGCATTC
GAGGTCGCCTGTGCTCCTTTTTTACGCTCACCATGAACACGGGCATAATG
GTGGGCTTTGTGGTGTCCTCGCACATCGCCTATCACGTGATACCCTGTGC
CGTCGTTGGACTGCCCGTGCTGTACGTGCTCCTGGCCACGCGATACCCGG
AGCCACCGCAGCAGTTAATCAGGTGGAAGCGCGAGGAGGAGGCCGAGAAG
TCACTAAGGTACTATCGCCGCTGCGACGGACCCAATGTTTCCAAGGAGGA
GGAGCGAGCTTATCAGAAACACTTCGACGAAATGCGGCTGGCCATCCAAC
AGCAAAACAACGACACTGACGACAATGGCCTCTCAATGTCCGATTTCCTC
ACCAAGCGCTCCTTGAAAGCCCTGGCCACGGGATTAGTTTTGATGGTAGC
CAACATCTTCACGGGCACCTTCGCCTTCAACAACTACATGTCCAACATCT
TTGATGCCGTGCACACTCAGCTGGATCCCAATACGAACACCATTATTATT
GAGCAGTGCAGATCCTGGCACGCTGGCCAGCATATTATTTGGTGGATCGC
TATGGGCGCAGATCCTGCTGATAGTGTCCTGTGCAAGCAGTGCATCGGAC
CTTCCGCCTTTGACTGTACGCTTCTATGCGAGGAGCAGAAAGGTGAACTA
TCCGCCTCTCGCCCTGGCTGCCCGCTCACCTGAATGCCTTCATACTTCAT
TGGCAACGGTG
UFO08976.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15406-RA | 1646 | CG15406-RA | 206..1364 | 9..1158 | 5240 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3310622..3310976 | 444..798 | 1775 | 100 | Plus |
| 2L | 23513712 | 2L | 3309770..3310003 | 81..314 | 1140 | 99.1 | Plus |
| 2L | 23513712 | 2L | 3311032..3311364 | 799..1124 | 1055 | 94 | Plus |
| 2L | 23513712 | 2L | 3310073..3310204 | 314..445 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 3309427..3309499 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:53:47 has no hits.
UFO08976.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:19 Download gff for
UFO08976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15406-RA | 198..1347 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:05 Download gff for
UFO08976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15406-RA | 198..1347 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:45 Download gff for
UFO08976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15406-RA | 198..1347 | 1..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:45 Download gff for
UFO08976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3311032..3311383 | 799..1143 | 93 | | Plus |
| 2L | 3309419..3309499 | 1..81 | 95 | -> | Plus |
| 2L | 3309771..3310003 | 82..314 | 99 | -> | Plus |
| 2L | 3310074..3310204 | 315..445 | 100 | -> | Plus |
| 2L | 3310624..3310976 | 446..798 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:05 Download gff for
UFO08976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3310624..3310976 | 446..798 | 100 | -> | Plus |
| arm_2L | 3309419..3309499 | 1..81 | 95 | -> | Plus |
| arm_2L | 3309771..3310003 | 82..314 | 99 | -> | Plus |
| arm_2L | 3310074..3310204 | 315..445 | 100 | -> | Plus |
| arm_2L | 3311032..3311383 | 799..1143 | 93 | | Plus |
