UFO08977.5prime Sequence
1125 bp (1015 high quality bases) assembled on 2011-08-10
> UFO08977.5prime
CAGTCGACATGGGGCACATCGATGGCACAAATAAACTGAAAGGCTTCGCT
CGTCCCGCATTCACCAGCGAACTGGCCTTCAATAGCGTGGTGCCATGGAG
CAATGAGATCCATCGACGCCACGGTGAGGCCATCCATCCGTGCAACGATG
CGATGGACTTCCATGCGTCGGTGTTTAGAAGTCTGGGTGCCGTGACGCGT
GTGTGCATTGGCACATCAACATTTTGGTGTACTTCGTCACTTTTGCAATT
TCATAGCAACTATTTTGATCGCAACATTTGTCCGGTGAATTGCTTTCGCG
AGGGCACCGACCTTATTGCCGTGGGCTTTCGAGCTGCCTACACTTGGATG
AGACTGCAGGAGCCACTGGATCCATTCATGCAACCAGATAAACTAATGAC
GCTCCTGCACACAGCCGTCCAGCTGGAGATGCCGGCACTGAAAGCATTGT
GCTATGAACAACTGTGCACCGATCGCTTTCGCGAGGAGACCGCCTTTCAG
GTTTACTTGAGGGCTTTGAAATATCCGCAACTCGAGGAGCTGCGCAAACT
GATGCTGCAAAGGATCGGTGCTGCTTTTCTGGCCGTGCTGGGTGGTGATG
ATTTTCAGCGAATGCCTCTCGAGGATGTGATTACCATGCTGCAGCAGGAC
TCATTGGGTGTCAATTCGGAAATGGAGGTGCTTGTGGCCATTATAAGATG
GCTGAATTGTCAATCGAAATGCATTGACCAGGCGACGCCACTATTGATGG
ACTGCCTTCGGCTGACACTCTTACCACTGCCAATTTTGAAAAGATTTTGG
CGCTGTGCCATGGCACCACCGGTGCCCGACGAGCCCTTTATGAACGCTGT
TCGTGGCAATATTCACATTCGTGAGAGGATCAGCTGTGCAATTACTGTGG
TCCAATGCACCATTTGCATACAGTCGTCGTGAGTTTCTCGACTTCTGTCG
CTCAGGGCTTGCTGGTCGATATGCCCAGGGGAGTGATATACGATGAGCAG
TGCCATTATCATTTGCCGCGACTGGTGGTCCCTACTCTCATCTTATCTGG
TGTTCATGTCATTTCGATTATGCGATACAAGCTCAGCGGTCTAATGAATC
TCAAGCGTTTGCCGAACGTTTATAC
UFO08977.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12692-RC | 1946 | CG12692-RC | 88..1202 | 9..1113 | 5205 | 98.5 | Plus |
| CG12692-RB | 1911 | CG12692-RB | 88..1202 | 9..1113 | 5205 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4300899..4301700 | 1080..284 | 3640 | 98.6 | Minus |
| X | 23542271 | X | 4301795..4302076 | 290..9 | 1395 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:53:52 has no hits.
UFO08977.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:20 Download gff for
UFO08977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12692-RB | 88..1187 | 9..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:07 Download gff for
UFO08977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12692-RB | 88..1187 | 9..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:47 Download gff for
UFO08977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12692-RB | 88..1187 | 9..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:47 Download gff for
UFO08977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4300876..4301699 | 285..1100 | 98 | <- | Minus |
| X | 4301801..4302083 | 2..284 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:07 Download gff for
UFO08977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4194909..4195732 | 285..1100 | 98 | <- | Minus |
| arm_X | 4195834..4196116 | 2..284 | 98 | | Minus |
