UFO08978.5prime Sequence
1132 bp (1045 high quality bases) assembled on 2011-08-10
> UFO08978.5prime
CAGTCGACATGATCGAAAATTCGTTTAAAATGGAAATGCACTTTAAAAAC
CGTTGGCAAGCGGCCAGCTTATTTTTGCGCTATCCTCGCACGGTCACACT
GTGCTTGAGCGGTAAAAGTGGCGATATGGACGAATCGGTCAATTTAAGCA
CCAGCATGGGCGATGTGGAGGCATCCATGCTGAATCACAACGTGAGCTTC
AGCAGCACCATGGTCACGTCCAATGGCGATCTTTCGTTGCCCAAACTGAG
CGTGACTCTTTCGGCGGAGGAGATCCTAAAGCTGCGTTCCGGGCGTCCAA
AGAACGCCGTTGAATCGCCGCATGCGGGTGTGCCCATGGAGACAAGCCTG
GCTGCCGAGGAGGAAGCGAATGGGGATGAGGAAGAGGAAAGCGTGCGGGT
CGTCGACATAGAGGACACTTTGGAGCTGACGTCGAATGGCAATGAGGCGA
AGCCGGAAGACCAGGAGCTTGCGATTGCTCCCGTCCTCCAGTACTTCCAG
GGAGCACTTGTTGAGTTGGGCCGACGCTGCTGGACCTCGTCCACGGAGGC
TCAGCACTACACCAAAGGCTGCTACTGGTCCCCGGACGGCACGTGCCTTC
TGGTGCCCGTTCACCTAGATGGCATGCACGTTATAGAGATGCCCAGTGAC
CTCTACTCCGCAGATACGGTGCAGCCGGCACGCTCGCTGACCAAGCTCCA
GTCGGAGGTGCACGTGCCCGAGGGCGGAACCGTCTACGACTGCGTCTGGT
ATCCGCACATGAACAGCCTGCAACCAGAAACCTGCTTGTGGCTGGCCACG
CGGCAGCACGAACCCATACACATGTGGGATGCCTTCGACGGTTCCCTGCG
ATGCAGCTACAGTGGGTACGATGCCGTAGACGAAGTAATGGCGGCCATTT
CCTTGGCCTTCTCCCATGACGGCGAGCAGATCTATGCGGGATACAGCGCT
GCATCAGATCTTCGACACCAGCAGACCCGGGACGTTTTGCGACGATTACC
CTGTCAAGTTTGCATATCCTGCATTGCACAGACCACTGGCGCACCCGCCA
ACTCTAACTGCGCAACTGGCATGGCTAACATCCATCACTTTGACCTGCCG
GGTGTAGCCCAGGCAGGTTCTCTCTCTTCAGC
UFO08978.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| WDR79-RC | 1724 | CG9226-RC | 40..1162 | 9..1130 | 5210 | 98.1 | Plus |
| WDR79-RB | 1602 | CG9226-RB | 1..1040 | 92..1130 | 4795 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6126899..6127553 | 790..136 | 3245 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6126655..6126843 | 974..788 | 845 | 98.9 | Minus |
| 2L | 23513712 | 2L | 6127610..6127736 | 135..9 | 635 | 100 | Minus |
| 2L | 23513712 | 2L | 6126471..6126585 | 1098..985 | 275 | 92.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:53:56 has no hits.
UFO08978.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:20 Download gff for
UFO08978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WDR79-RA | 27..1149 | 9..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:10 Download gff for
UFO08978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WDR79-RB | 1..1040 | 92..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:50 Download gff for
UFO08978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WDR79-RC | 40..1162 | 9..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:50 Download gff for
UFO08978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6126655..6126843 | 788..974 | 98 | <- | Minus |
| 2L | 6126902..6127553 | 136..787 | 99 | <- | Minus |
| 2L | 6127610..6127736 | 9..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:10 Download gff for
UFO08978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6126655..6126843 | 788..974 | 98 | <- | Minus |
| arm_2L | 6126902..6127553 | 136..787 | 99 | <- | Minus |
| arm_2L | 6127610..6127736 | 9..135 | 100 | | Minus |
