UFO08979.5prime Sequence
1151 bp (1042 high quality bases) assembled on 2011-08-10
> UFO08979.5prime
CAGTCGACATGTCTTTCGATCAGAAGGAGATTTTCAGTTTGATGTACAAA
CTGGCTCGGCTAATAGTGCCGGATACTCGAGTTGAATATGATTCGATGGG
TGCCGTGCACATTCCTCTCGATCGAATGTTCGGTCCGCAAACCATGAGAT
CCCTGATGAAATTTCCAATTGGCGGAGTTGAGGAACGAATGCCACGACCC
CTAATAAAAGCCCTGGGCATAGTGAAGAAATCAGCTGCGGAGACGAACAA
AATCCATTGTCTGGAGGAGCATCTATGCGATGCCATTTCCAAGGCCTGCG
ATGATGTTATATCGGGCAAACTCTATGACGAGGAACACTTTCCGTTGGTT
ATATGGCAGGATGGAAGCGGCGAGCACACAAACATGAACGTAAACGAGGT
TATATGCAATCGAGCCATCGAAATTCTGGGCGGTCAGATGGGCTCCAAGG
AGCCGGTGGATCCCAATGAACATGTCAACATGGCGCAAAGTTCCCATGAC
ACCTTCTCGACAGCCGTGCGCATCGCCGTGGCCATGCAGTTGCAGGAGAC
GCTGTATCCCAGCTTAAGGACCTTTATTGATTTGCTGGGCAAGAAGTCGA
ACGATTGGATGGATTTGATCAAGATTGGTAGAACGCATCTGATGGACGCA
GTTCCTCTGTCCCTCGGCCAGGAGTTCAGTGGCTATCAGCAGCAACTTGT
GAACGGAAGGACGCGATTGGACTGTGCCATGTGCCGATTGTATCAGTTGC
CCATGGGCGGCACCAGTGTGGGCACCAAAGTGGACACCAAGGCGGAATAT
TCTGCGCAGTGCATCAAGCGTATAGCCGAGCTAACATTCCTACCCTTTGT
CGAGTCCCCGAACTTTTTTGAATCCATCTCCGCCTGCGATTGCCTGGTGG
AACTGCACGGTGAACTCAACACGATTGCAGCGAGTGTGATGAGATAGCGA
ATGATATACGATTCCTTGGATCGGGACACGTTGCGGATTTGTGAACTACA
TCTGCCGGAGAACGAACCAGGTAGTTCCATATGCCCGGGCAAAGTGAATC
CCACGCATGCAGGCCATGTCCATGAATCTGTGCCAAGGTGATGGCACACA
TGTGGCCGTCTCATGTGATTCTCTTGGCATTCACCTGAACCCCTTATGTG
C
UFO08979.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31874-RA | 1623 | CG31874-RA | 73..1181 | 9..1112 | 5285 | 98.9 | Plus |
| CG6140-RB | 1806 | CG6140-RB | 1096..1262 | 950..1112 | 315 | 82.2 | Plus |
| CG6140-RA | 1652 | CG6140-RA | 942..1108 | 950..1112 | 315 | 82.2 | Plus |
| CG6140-RB | 1806 | CG6140-RB | 526..679 | 381..534 | 215 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10190262..10191184 | 1112..195 | 4165 | 98.5 | Minus |
| 2L | 23513712 | 2L | 10191239..10191424 | 194..9 | 930 | 100 | Minus |
| 3L | 28110227 | 3L | 11464752..11464905 | 534..381 | 215 | 76 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:58:25 has no hits.
UFO08979.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:00 Download gff for
UFO08979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31874-RA | 73..1195 | 9..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:08 Download gff for
UFO08979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31874-RA | 73..1195 | 9..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:37 Download gff for
UFO08979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31874-RA | 73..1195 | 9..1124 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:37 Download gff for
UFO08979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10190246..10191184 | 195..1124 | 98 | <- | Minus |
| 2L | 10191239..10191424 | 9..194 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:08 Download gff for
UFO08979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10190246..10191184 | 195..1124 | 98 | <- | Minus |
| arm_2L | 10191239..10191424 | 9..194 | 100 | | Minus |
