UFO08982.5prime Sequence
1134 bp (1028 high quality bases) assembled on 2011-08-10
> UFO08982.5prime
CAGTCGACATGATGTACTCTAAGGCTGAAGTAGTCCAGGCAGCGAACATG
TCGCTGGGTGCCATGCATTGTACGCGATGTGCCGACGGCTTCGAGCCGAC
TGAGAAGATTGTTAACTCCAATGGAGAACTCTGGCACACCCAGTGCTTCG
TATGTGCCCAGTGCTTCCGACCCTTCCAGGATGGGATATTCTACGAGTTC
GAGGGCCGTAAGTACTGTGAACGCGACTTTCACGTGCTCTTCGCTCCCTG
CTGCAACAAGTGCGGCGAGTTCGTCATCGGACGGGTCATCAAGGCCATGT
CAGCTAGCTGGCATCCACAGTGCTTCCGCTGCCAATTGTGCGCCAAGGAG
CTGGCTGATTGCGGATTCATCAAGAACCAGAACCGCGCCTTGTGTCACGA
GTGCAATGCCAAGGTGAAGGCGGAGATTACCGGCCGCTATGTATGCCAAA
AATGCCACGGCCTCATCGACGAGGAGCCTTTGCGATTCCGGGGCGAAGTG
TACCACGGCTATCACTTCAGTTGCACGGCCTGCGGCACAGAGTTGGATTC
CACTGCTCGGGAGGTCAAGAGCCGGCCAGGATTGGCTGCTAACGATATGA
ACGAACTGTATTGTCTGCGTTGTCACGATAAAATGGGCATTCCCATATGT
GGTGCCTGTCGTCGTCCGATTGAGGAGAGGGTGGTAACGGCGCTCGGAAA
GCACTGGCATGTGGAACATTTCGTGTGCGCCAAGTGCGAGAAACCCTTCT
TGGGTCACCGACACTACGAGAAGCGGGGATTGGCCTACTGCGAGACGCAC
TATCATCAGCTCTTTGGCAACCTGTGCTTCGTCTGCAACCAGGTTATTGG
AGGCGATGTTTTCACTGCCTTGAACAAGGCCTGTGTGTGCACCACTTTGC
GTGCTCCGTGTGCGACACGAGATGACACAAAAATCGAAATTCTACGAGTA
CGACGAGAGCCGGTTGTGCAAAAGGTGCTATGACCGATTTCCAACGAACT
CAGACGACGTCTGCCCACCGCCCACGAGATGACATGAAAAGAACACGGCA
GCTTTCAGACCATTCGTTGGCCGCGCGGGCCCAGTATGTCCTACCCATAG
TCTAATCCTATCCTATCCAACTAGCCTTAGGAAT
UFO08982.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RC | 1335 | CG7954-RC | 54..1097 | 8..1046 | 5020 | 99.1 | Plus |
| stck-RA | 1380 | CG7954-RA | 113..1138 | 25..1046 | 4910 | 99 | Plus |
| stck-RD | 1500 | CG7954-RD | 239..1258 | 32..1046 | 4900 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8358649..8358954 | 152..457 | 1530 | 100 | Plus |
| 3R | 32079331 | 3R | 8359206..8359465 | 599..858 | 1300 | 100 | Plus |
| 3R | 32079331 | 3R | 8359009..8359150 | 458..599 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 8359529..8359708 | 858..1034 | 660 | 95 | Plus |
| 3R | 32079331 | 3R | 8358471..8358590 | 32..151 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:54:01 has no hits.
UFO08982.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:21 Download gff for
UFO08982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RC | 46..1089 | 8..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:12 Download gff for
UFO08982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RC | 54..1097 | 8..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:53 Download gff for
UFO08982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RC | 54..1097 | 8..1046 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:53 Download gff for
UFO08982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8359207..8359465 | 600..858 | 100 | -> | Plus |
| 3R | 8359530..8359722 | 859..1046 | 95 | | Plus |
| 3R | 8358649..8358954 | 152..457 | 100 | -> | Plus |
| 3R | 8359009..8359150 | 458..599 | 100 | -> | Plus |
| 3R | 8358381..8358404 | 8..31 | 100 | -> | Plus |
| 3R | 8358471..8358590 | 32..151 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:12 Download gff for
UFO08982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4184103..4184126 | 8..31 | 100 | -> | Plus |
| arm_3R | 4184193..4184312 | 32..151 | 100 | -> | Plus |
| arm_3R | 4184371..4184676 | 152..457 | 100 | -> | Plus |
| arm_3R | 4184731..4184872 | 458..599 | 100 | -> | Plus |
| arm_3R | 4184929..4185187 | 600..858 | 100 | -> | Plus |
| arm_3R | 4185252..4185444 | 859..1046 | 95 | | Plus |
